Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60796g00008 ATGTTTAGTGTGTTAGCTGATAATCTTCCAATTGATGCAACAAAGCGTTGGCTTTGGAAGGTGTTTAGCAGCACAGGCAGGGTGGAGGACATCTATCTTTCCATAAAAGTAAGGAAAGGAAACCCCTTGAGGTTTGCGTTCATCATATTTAAAACAAGGGAGGAAGCCAGAAGGGCAATTGAACAACTTGATGGCTGGATCGTTTGGGGATGCAGAATATCCGTGTCGGAGTCCAAATATAGAAGGAAAATCAATCCGAAGAATGAAAGGCCTGACCAAGCTGTGAATTTGGATGAGTGTTCTAGGTTGCAGACGTTTGGCAACTCAAAGATCTATTTGGAGGAAAGCAAAGCGTTGAAAGAGAAGCTAAGGAGATGCGTGATTGGAGAGGCCCTGGATGCAATCAACGTTGAATCGCTACTGCAATAA 429 0.4359 MFSVLADNLPIDATKRWLWKVFSSTGRVEDIYLSIKVRKGNPLRFAFIIFKTREEARRAIEQLDGWIVWGCRISVSESKYRRKINPKNERPDQAVNLDECSRLQTFGNSKIYLEESKALKEKLRRCVIGEALDAINVESLLQ 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60796g00008 142 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 88 - -
Stsc60796g00008 142 CDD RRM_SF 8 76 - -
Stsc60796g00008 142 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 80 IPR000504 GO:0003723
Stsc60796g00008 142 Gene3D - 3 102 IPR012677 -
Stsc60796g00008 142 SMART rrm1_1 3 76 IPR000504 GO:0003723
Stsc60796g00008 142 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 73 IPR000504 GO:0003723
Stsc60796g00008 142 SUPERFAMILY RNA-binding domain, RBD 4 89 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60796g00008 Stsc-Chr60796 31481 32032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60796g00008 3 66 Eukaryotic Initiation Factors Gene Family AT3G11400 35.938 2.54e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60796g00008 - - aip:107610597 54.299