Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60794g00008 ATGTTGAGTTTATTCATTATATGCAACAAAGGTTCTCCCAATATGGAAGTTGACAATTCTAATATTTCAAAAGCTGAAGAGTTCAAGCTCCGTGCCAATGAAGCATTCAATGCTCGCAAATTTACTCAAGCTATTGAACTATATACACAAGCTATTGAACTAAACAATAGAAATGCGGTTTACTACGCTAATCGTGCCTTTGCACATCTTCGGCTTGAGGAATATGGTAGTGCCATACAAGATGCTACAAAGGCTATTGAAGTTGATCCTAAATACTCAAAGGGTTATTATAGGCGAGGTACAGCTCATCTTGCCATGGGAAAATTCAAGGAGGCTCTAAAAGATTTTCAGCAGGTCAAGAAAATGTGCCCAAATGACACTGATGCATCAAAGAAATTGAAGGAGTGTGAAAAAGCCGTTATGAAACTTAAATTTGAAGAAGCAATTGCTGCGCCTGAGCATCAAAGACGTTCAATAGCCGAATCATTAGATTTCCGTTCTATAGAGGTGGAGCCACAATACTCAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAGAAAATGATGGATGATTTCAAGAATCAAAAGTGCTTACACAAACGTTATGCATTCCAGATTGTATTGCAAACTAGAGAAATGTTGAAAGCTTTGCCTTCTCTTGTTGATATAAATGTTCCTAATGGCAAACATTTCACTGTTTGTGGTGATGTGCATGGTCAGTACTATGATCTCTTGAATATTTTTGAGCTCAACGGGCTTCCCTCTGAAGAGAATCCTTACCTATTTAATGGTGACTTCGTGGATAGAGGATCGTTTTCTGTGGAGGTTATCCTCACTTTGTTTGCATTTAAGTGCTTGTATCCTTCAGGCATGTATCTAGCTAGAGGAAATCATGAGAGTAAGAACATGAACAAGATATACGGTTTTGAGGGCGAGGTGCGCTCAAAGTTGAACGAAACATTCGTGGAACTGTTTGCAGAAGTATTTTGCTGTTTACCCTTGGCTCATTTGATAAATGAGAAAATTTTCATAGTTCATGGAGGTCTATTTAGTGTTGATGGGGTCAAACTCTCTGATATCCGAGCAATTGACCGATTCCGTGAGCCTCCAGAAGAAGGACTGATGTGTGAATTGCTTTGGAGCGATCCGCAACCTCTACCTGGAAGAGGTCCAAGCAAGAGGGGCGTCGGTCTCTCTTTCGGTGCTGATGTCACAAAAAGGTTTTTGCAAGATAATAACTTAGATTTAGTTATACGATCTCATGAAGTAAAGGATGAGGGTTACGAGATTGATCACGATGGTAAACTCATAACTGTTTTCTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGTGCCTTTATTAAGTTTGAAGCACCTGATTTGAAGCCTAACATTGTTACATTCTCAGCAGTGCCACACCCTGATGTGAAGCCAATGGCTTATGCAAACAACTTTCTCAGGTTATTTTCATAG 1491 0.397 MLSLFIICNKGSPNMEVDNSNISKAEEFKLRANEAFNARKFTQAIELYTQAIELNNRNAVYYANRAFAHLRLEEYGSAIQDATKAIEVDPKYSKGYYRRGTAHLAMGKFKEALKDFQQVKKMCPNDTDASKKLKECEKAVMKLKFEEAIAAPEHQRRSIAESLDFRSIEVEPQYSGARIEGDVVTLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLKALPSLVDINVPNGKHFTVCGDVHGQYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCLYPSGMYLARGNHESKNMNKIYGFEGEVRSKLNETFVELFAEVFCCLPLAHLINEKIFIVHGGLFSVDGVKLSDIRAIDRFREPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNNLDLVIRSHEVKDEGYEIDHDGKLITVFSAPNYCDQMGNKGAFIKFEAPDLKPNIVTFSAVPHPDVKPMAYANNFLRLFS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60794g00008 496 ProSiteProfiles TPR repeat profile. 25 58 IPR019734 GO:0005515
Stsc60794g00008 496 Pfam Tetratricopeptide repeat 61 91 IPR019734 GO:0005515
Stsc60794g00008 496 Pfam PPP5 TPR repeat region 133 226 IPR013235 -
Stsc60794g00008 496 PRINTS Serine/threonine phosphatase family signature 417 437 IPR006186 GO:0016787
Stsc60794g00008 496 PRINTS Serine/threonine phosphatase family signature 439 455 IPR006186 GO:0016787
Stsc60794g00008 496 PRINTS Serine/threonine phosphatase family signature 331 357 IPR006186 GO:0016787
Stsc60794g00008 496 PRINTS Serine/threonine phosphatase family signature 297 321 IPR006186 GO:0016787
Stsc60794g00008 496 PRINTS Serine/threonine phosphatase family signature 234 261 IPR006186 GO:0016787
Stsc60794g00008 496 PRINTS Serine/threonine phosphatase family signature 361 388 IPR006186 GO:0016787
Stsc60794g00008 496 PRINTS Serine/threonine phosphatase family signature 264 291 IPR006186 GO:0016787
Stsc60794g00008 496 Gene3D Tetratricopeptide repeat domain 18 147 IPR011990 GO:0005515
Stsc60794g00008 496 FunFam Serine/threonine-protein phosphatase 5 15 152 - -
Stsc60794g00008 496 FunFam Serine/threonine-protein phosphatase 5 153 495 - -
Stsc60794g00008 496 SUPERFAMILY Metallo-dependent phosphatases 182 490 IPR029052 -
Stsc60794g00008 496 SUPERFAMILY TPR-like 21 151 IPR011990 GO:0005515
Stsc60794g00008 496 Gene3D - 148 495 IPR029052 -
Stsc60794g00008 496 CDD MPP_PP5_C 174 489 IPR041753 -
Stsc60794g00008 496 Pfam Calcineurin-like phosphoesterase 234 428 IPR004843 GO:0016787
Stsc60794g00008 496 ProSiteProfiles TPR repeat profile. 59 92 IPR019734 GO:0005515
Stsc60794g00008 496 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 57 489 - -
Stsc60794g00008 496 ProSiteProfiles TPR repeat profile. 93 126 IPR019734 GO:0005515
Stsc60794g00008 496 SMART pp2a_7 202 478 IPR006186 GO:0016787
Stsc60794g00008 496 PIRSF PPPtase_5 12 496 - -
Stsc60794g00008 496 SMART tpr_5 25 58 IPR019734 GO:0005515
Stsc60794g00008 496 SMART tpr_5 59 92 IPR019734 GO:0005515
Stsc60794g00008 496 SMART tpr_5 93 126 IPR019734 GO:0005515
Stsc60794g00008 496 Pfam Tetratricopeptide repeat 94 126 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60794g00008 Stsc-Chr60794 33914 38449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60794g00008 168 418 Calmodulin-binding Proteins AT5G63870 31.081 5.96e-37 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60794g00008 K04460 - aew:130790041 880.552