Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60791g00002 ATGGGAGGATCAGAAGCTTCTAGTGAAAACTTTCAACGAGAAGTTCAAGATCATCATCATGAGTTATCCATGAGTACCAAAAGATCTTATGATTGCACATTCTGCAAGAGGGGATTCACTAACTCTCGTGCATTAGGAGGCCACATGAACATTCACAGGAAAGAGAGAACAAACGCCATGAAAGCCGCAGCGGCCACACCCAAAACCGAAACCACGGCGACTCCTTTTGTTCCAGAAGCTTCTACAAGCTCGAGGTATTGCTGCATTTTGGAGGCTCAAAGTAACTATGAAGTGTACCTTAGGCCTTCATCGCCAGAGACTAATCATATAAACAATCCCCAACATGCATATACCTTCCAATACGAGTTTCTTAAGCCAAGAAACCAAGAAATTCTGGGTGCCAATTTAAGTCTCCAAATTGATCAAGATGGTGATGACGATGTTGAAGTTAGGAGAAGAATTCAGGAAGATGACATCGGAGTAGACTTGGAACTTAGGCTTGGTCATGATTCATACTCAAACTTCTGA 528 0.4261 MGGSEASSENFQREVQDHHHELSMSTKRSYDCTFCKRGFTNSRALGGHMNIHRKERTNAMKAAAATPKTETTATPFVPEASTSSRYCCILEAQSNYEVYLRPSSPETNHINNPQHAYTFQYEFLKPRNQEILGANLSLQIDQDGDDDVEVRRRIQEDDIGVDLELRLGHDSYSNF 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60791g00002 175 Gene3D Classic Zinc Finger 4 84 - -
Stsc60791g00002 175 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Stsc60791g00002 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Stsc60791g00002 175 SUPERFAMILY beta-beta-alpha zinc fingers 27 57 IPR036236 -
Stsc60791g00002 175 MobiDBLite consensus disorder prediction 1 22 - -
Stsc60791g00002 175 PANTHER OS07G0101800 PROTEIN 10 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60791g00002 Stsc-Chr60791 31743 32270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60791g00002 30 62 C2H2 Transcription Factor Family AT5G43540 72.727 3.51e-13 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc60791g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60791g00002 - - mtr:25483021 156.377