Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60790g00006 ATGAAGTATTTTATTTGCATTGCTTTATATTTGTTCTGTGCAGTTTGGGCGCTTTCTAGCTTCAAAGAAGCTGTGAGTGATGACCCGTTTCTAGTTCTATCCAACTGGAATACCATAGATTCAGATCCTTGTAACTGGTTTGGTGTCTTATGCACTACTGATAGAGATCATGTCATCAAGATAAACATATCAGGATCATCATTGAAGGGATTTCTTGCACCAGAGATGGGGCAAATCACCTACTTACAAGAACTAATTTTGCACGGCAACAGTCTCATAGGAATAATACCTAAAGATTGGGGCATGTTGAAGTCCCTTAAGGTGTTGGATTTGGGAGATAATCTGTTAACTGGACCAATTCCTCCAGAGTTTGGAAATTTAACCGAACTTGTGAACATGAACCTGCAGTCCAATGATCTGACTGGCAGGTTACCTCCAGAGCTTGGAAATTTGAAATACCTTCAAGAACTTCGCCTTGATAGGAATAAGTTTCAAGGGCCTGTTCCTGGTGGCAGCAGTTCAAATTTTTCCTCAACTATCCATGGGATGTATGCTACAAATGCAAATTTAACTGGCTTCTGTCGTTGGTCTCAGTTAAAAGTAGCAGACTTTTCATATAACTATTTAGTTGGGAGCATACCTGGATGCTTGGATTATCTTCCAAGTTTATACTTTCAAGGAAACTGCCTTCAGATTCAGAACAAAGATGCAAAACAGCGGCCCATAGTTCAATGTGCCGGTGCATCACCTGCAAGAAGCCAGCCAGTGGTGAACCCAAACCACCAATCTAATATGTATGTGTCGCATCATGGAGCATCAAAACCTGTTTGGCTTCTGGCTCTAGAAATAATAACAGGAACCATGATAGGTTCTCTCTTTCTGATTGCTCTTCTCGCCGCCTTTCAGAGGTGGAATAAGAAAGCATCCATCATTATTCCTTGGAAAAAATCTTCAAGCCAGAACGACCACACAACAGTATATATAGACCCAGAGATGTTGAAAGATGTGAGAAGGTATACAAGACAAGAGCTTGAAGTGGCATGCGAAGACTTCAGCAACATAATTGGGTCATCACCGGATAGTGTGGTCTACAAGGGAAACATGAGAGGTGGGCCTGAGATTGCTGTAATATCTCTCTGCATCAAGGAGGAGCATTGGACAGGATATCTTGAACTCTATTTTCAAAGAGAGGTGGCAGACTTGGCAAGGTTAAATCATGAGAATACAGGAAAACTGCTGGGGTATTGTAGAGAGAGCACTCCATTTACAAGGATGTTAGTTTTTGAGTATGCTTCAAACGGGACACTTCATGAGCACCTACATATCTATGGAGAAAGATGTCAATTCTCTTGGACAAGGCGTATGAAGATCATAATAGGCATTGCACGTGGACTCAAGTATCTACATACGGAAATTGATCCTCCATTCACTATCTCAGAGCTGAATTCTAGTGCTGTATACCTTACAGAAGAATTTTCCCCCAAGTTGGTTGATTTCGAAAGTTGGAAATCAATCCTTGAAAGATCAGAAAAGAATTCTGGTTCTATTGGCAGTCAAGGTGCTATTTGCGTCCTCCCAAATTCCGTCGAGGCTCGCCATCTTGATACCAAAGGAAACATACATGCTTTTGGGGTACTTCTACTGGAGATAATCAGTGGAAGACCTCCATACTGCAAGAACAAGGGGTATTTGGTTGACTGGGTAATAAACTTGTGA 1716 0.4149 MKYFICIALYLFCAVWALSSFKEAVSDDPFLVLSNWNTIDSDPCNWFGVLCTTDRDHVIKINISGSSLKGFLAPEMGQITYLQELILHGNSLIGIIPKDWGMLKSLKVLDLGDNLLTGPIPPEFGNLTELVNMNLQSNDLTGRLPPELGNLKYLQELRLDRNKFQGPVPGGSSSNFSSTIHGMYATNANLTGFCRWSQLKVADFSYNYLVGSIPGCLDYLPSLYFQGNCLQIQNKDAKQRPIVQCAGASPARSQPVVNPNHQSNMYVSHHGASKPVWLLALEIITGTMIGSLFLIALLAAFQRWNKKASIIIPWKKSSSQNDHTTVYIDPEMLKDVRRYTRQELEVACEDFSNIIGSSPDSVVYKGNMRGGPEIAVISLCIKEEHWTGYLELYFQREVADLARLNHENTGKLLGYCRESTPFTRMLVFEYASNGTLHEHLHIYGERCQFSWTRRMKIIIGIARGLKYLHTEIDPPFTISELNSSAVYLTEEFSPKLVDFESWKSILERSEKNSGSIGSQGAICVLPNSVEARHLDTKGNIHAFGVLLLEIISGRPPYCKNKGYLVDWVINL 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60790g00006 571 SUPERFAMILY Protein kinase-like (PK-like) 325 561 IPR011009 -
Stsc60790g00006 571 Gene3D Ribonuclease Inhibitor 15 243 IPR032675 -
Stsc60790g00006 571 FunFam Inactive receptor-like serine/threonine-protein kinase 323 430 - -
Stsc60790g00006 571 Gene3D Transferase(Phosphotransferase) domain 1 431 571 - -
Stsc60790g00006 571 ProSiteProfiles Protein kinase domain profile. 349 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60790g00006 571 SUPERFAMILY L domain-like 16 224 - -
Stsc60790g00006 571 Gene3D Phosphorylase Kinase; domain 1 322 430 - -
Stsc60790g00006 571 Pfam Protein tyrosine and serine/threonine kinase 353 560 IPR001245 GO:0004672|GO:0006468
Stsc60790g00006 571 Pfam Leucine rich repeat N-terminal domain 17 51 IPR013210 -
Stsc60790g00006 571 Pfam Leucine rich repeat 81 140 IPR001611 GO:0005515
Stsc60790g00006 571 PANTHER PROTEIN MALE DISCOVERER 2 14 568 - -
Stsc60790g00006 571 FunFam Leucine-rich repeat receptor-like protein kinase 14 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60790g00006 Stsc-Chr60790 22698 26248 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60790g00006 20 571 Receptor kinase-like Gene Family AT5G45780 29.204 1.99e-48 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Stsc60790g00006 PK_Tyr_Ser-Thr 8.9e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60790g00006 - - ahf:112749652 1037.71