Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60790g00005 ATGAAGTATTTTATTTGCATTGCTTTATATTTGTTCTGTGCAGTTTGGGCGCTTTCTAGCTTCAAAGAAGCTGTGAGTGATGACCCGTTTCTAGTTCTATCCAACTGGAATACCATAGATTCAGATCCTTGTAACTGGTTTGGTGTCTTATGCACTACTGATAGAGATCATGTCATCAAGATAAACATATCAGGATCATCATTGAAGGGATTTCTTGCACCAGAGATGGGGCAAATCACCTACTTACAAGAACTAATTTTGCACGGCAACAGTCTCATAGGAATAATACCTAAAGATTGGGGCATGTTGAAGTCCCTTAAGGTGTTGGATTTGGGAGATAATCTGTTAACTGGACCAATTCCTCCAGAGTTTGGAAATTTAACCGAACTTGTGAACATGAACCTGCAGTCCAATGATCTGACTGGCAGGTTACCTCCAGAGCTTGGAAATTTGAAATACCTTCAAGAACTTCGCCTTGATAGGAATAAGTTTCAAGGGCCTGTTCCTGGTGGCAGCAGTTCAAATTTTTCCTCAACTATCCATGGGATGTATGCTACAAATGCAAATTTAACTGGCTTCTGTCGTTGGTCTCAGTTAAAAGTAGCAGACTTTTCATATAACTATTTAGTTGGGAGCATACCTGGATGCTTGGATTATCTTCCAAGTTTATACTTTCAAGGAAACTGCCTTCAGATTCAGAACAAAGATGCAAAACAGCGGCCCATAGTTCAATGTGCCGGTGCATCACCTGCAAGAAGCCAGCCAGTGGTGAACCCAAACCACCAATCTAATATGTATGTGTCGCATCATGGAGCATCAAAACCTGTTTGGCTTCTGGCTCTAGAAATAATAACAGGAACCATGATAGGTTCTCTCTTTCTGATTGCTCTTCTCGCCGCCTTTCAGAGGTGGAATAAGAAAGCATCCATCATTATTCCTTGGAAAAAATCTTCAAGCCAGAACGACCACACAACAGTATATATAGACCCAGAGATGTTGAAAGATGTGAGAAGGTATACAAGACAAGAGCTTGAAGTGGCATGCGAAGACTTCAGCAACATAATTGGGTCATCACCGGATAGTGTGGTCTACAAGGGAAACATGAGAGGTGGGCCTGAGATTGCTGTAATATCTCTCTGCATCAAGGAGGAGCATTGGACAGGATATCTTGAACTCTATTTTCAAAGAGAGGTGGCAGACTTGGCAAGGTTAAATCATGAGAATACAGGAAAACTGCTGGGGTATTGTAGAGAGAGCACTCCATTTACAAGGATGTTAGTTTTTGAGTATGCTTCAAACGGGACACTTCATGAGCACCTACATATCTATGGAGAAAGATGTCAATTCTCTTGGACAAGGCGTATGAAGATCATAATAGGCATTGCACGTGGACTCAAGTATCTACATACGGAAATTGATCCTCCATTCACTATCTCAGAGCTGAATTCTAGTGCTGTATACCTTACAGAAGAATTTTCCCCCAAGTTGGTTGATTTCGAAAGTTGGAAATCAATCCTTGAAAGATCAGAAAAGAATTCTGGTTCTATTGGCAGTCAAGGTGCTATTTGCGTCCTCCCAAATTCCGTCGAGGCTCGCCATCTTGATACCAAAGGAAACATACATGCTTTTGGGGTACTTCTACTGGAGATAATCAGTGGAAGACCTCCATACTGCAAGAACAAGGGGTATTTGGTTGACTGGGCCAAGGACTATCTTGAAATGCCAGAAGTGATGTCATATGTGGTGGATCCGGAATTGAAGCATTTTAGATATGATGACCTCAAAGTGATATGTGAGGTAGTGAGCCTCTGTATCAACCCTGATACCAATGCACGCCCGTCTATGGGAGAATTATGGGGCATGCTTGAGAGCAAAATCGACACATCAACTAGCGTGGAGCTCAAGTCATCATCATTGGCTTGGGCTGAACTTGCACTCTTATCATAA 1947 0.4201 MKYFICIALYLFCAVWALSSFKEAVSDDPFLVLSNWNTIDSDPCNWFGVLCTTDRDHVIKINISGSSLKGFLAPEMGQITYLQELILHGNSLIGIIPKDWGMLKSLKVLDLGDNLLTGPIPPEFGNLTELVNMNLQSNDLTGRLPPELGNLKYLQELRLDRNKFQGPVPGGSSSNFSSTIHGMYATNANLTGFCRWSQLKVADFSYNYLVGSIPGCLDYLPSLYFQGNCLQIQNKDAKQRPIVQCAGASPARSQPVVNPNHQSNMYVSHHGASKPVWLLALEIITGTMIGSLFLIALLAAFQRWNKKASIIIPWKKSSSQNDHTTVYIDPEMLKDVRRYTRQELEVACEDFSNIIGSSPDSVVYKGNMRGGPEIAVISLCIKEEHWTGYLELYFQREVADLARLNHENTGKLLGYCRESTPFTRMLVFEYASNGTLHEHLHIYGERCQFSWTRRMKIIIGIARGLKYLHTEIDPPFTISELNSSAVYLTEEFSPKLVDFESWKSILERSEKNSGSIGSQGAICVLPNSVEARHLDTKGNIHAFGVLLLEIISGRPPYCKNKGYLVDWAKDYLEMPEVMSYVVDPELKHFRYDDLKVICEVVSLCINPDTNARPSMGELWGMLESKIDTSTSVELKSSSLAWAELALLS 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60790g00005 648 SUPERFAMILY L domain-like 16 224 - -
Stsc60790g00005 648 Gene3D Phosphorylase Kinase; domain 1 322 430 - -
Stsc60790g00005 648 Pfam Leucine rich repeat 81 140 IPR001611 GO:0005515
Stsc60790g00005 648 PANTHER PROTEIN MALE DISCOVERER 2 14 648 - -
Stsc60790g00005 648 SUPERFAMILY Protein kinase-like (PK-like) 325 623 IPR011009 -
Stsc60790g00005 648 Gene3D Transferase(Phosphotransferase) domain 1 431 639 - -
Stsc60790g00005 648 Gene3D Ribonuclease Inhibitor 15 243 IPR032675 -
Stsc60790g00005 648 FunFam Leucine-rich repeat receptor-like protein kinase 14 170 - -
Stsc60790g00005 648 Pfam Protein tyrosine and serine/threonine kinase 353 619 IPR001245 GO:0004672|GO:0006468
Stsc60790g00005 648 Pfam Leucine rich repeat N-terminal domain 17 51 IPR013210 -
Stsc60790g00005 648 ProSiteProfiles Protein kinase domain profile. 349 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60790g00005 648 FunFam Inactive receptor-like serine/threonine-protein kinase 323 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60790g00005 Stsc-Chr60790 22698 26248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60790g00005 32 627 Receptor kinase-like Gene Family AT5G45780 29.133 8.83e-56 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Stsc60790g00005 PK_Tyr_Ser-Thr 3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60790g00005 - - ahf:112749652 1144.8