Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60790g00003 ATGTCGCCAGCGGCAGCGGAGGCGAAAGCGGTGTTGAGTGTGATGGGAATGACATGTGCTGCGTGCGCTGGATCGGTGGAGAAATGTATAAAGCGATTACCAGGGATTCTACAAGCTGTGGTTGATGTGTTCAATGATAAAGCTCGTGTTCTCTATTATCCATCTATGCTTAATGTGGAGAGAATATGCGAAGCCATTGAAGATGCAGGATATGAAGCGAAGCTTATTATTGAAGAAGAATCCAATGATGATGAGAACTCTTGTGATGAGATTTGTAGAGTACACATAAGGGGAATGACTTGCACTTCTTGCTCTTCAACTCTTGAATCAGCTCTTCAATCCCTTAGAGGTGTGCACACTGCTCAAGTGGCATTAGCAACTGAAGAAGCAGAAATTCACTATGATCCTAACATTGTAACCTATGATCAACTCAAAGAGGCTATAGAGGACACTGGATTTGAATCCATATTAATAAGCACTGGAGATCACATAAGCAACATACATCTTAAAGTTGATGGCATTAAGAATGAACAATCAATAACTGCTATTCAGAATTCTCTTCAATCTCTTCCTGGAGTTGTAAACATTGATATATACCGTGACATTAACAAAGTTTCCATAGCTTATAAACCATACATGACAGGGCCTAGAACCTTCATTCAAGTCATAGAATCTGCAGGTTCTGGATGTTTCAAAGCCGAGATATTTCCGGCTGAAGAAGGAGAAAGAGAGTCTCATAAGAAGCAGGAGATTAAGCAGTACTTCAAGTTCTTCATTTGGAGTTTGGTTTTCACCATTCCTGTGTTCCTAACATCAATGGTTCTTATGTATGTACCTGGAGTTAAACATGTTCTTGATATCAAAGTTGTGAATATGCTTAAACTTGGACAGTTACTGAGATGGGAATTGGCTACACCAGTGCAGTTCATCATAGGAAGGAGATTCTACATTGGATCATACAAATCGTTGCGCAAAGGCTCTGCCAACATGGATGTGTTGATTGCATTGGGAACAAATGCAGCATACTTTTATTCGGTTTATGTGGTGGCAAGAGCTGCATTCTCAAGAGATTTCAAAGGCAATGATTTCTTTGAGACAAGTTCTATGCTGATTTCGTTTATTCTGTTGGGGAAGTATTTAGAGGTGTTGGCCAAAGGGAAAACATCTCAGGCCATTGCTAAGCTTATTCACTTGACACCTGATACAGCAATCCTGTTGAATCAAGATGGTGAAGAAGAGATTGATAGCAGGTTGGTGCAAAAGAATGATGTGATTAAAGTAGTTCCTGGCGCGAAAGTTGCTTCGGATGGAATCGTTATATGGGGCCAAAGCCATGTCAATGAGAGCATGATAACCGGAGAGGCAAGGCCGGTGGCGAAGAGGAAGGGTGACATGGTGATTGGAGGCACAGTGAATCAGAATGGAGTCTTGCATGTGAAGGTAACGAGGGTTGGATCAGAGAGTGCCCTGTCTCAGATTGTTAGACTAGTTGAGTCTGCTCAGATGGCCAAAGCTCCAGTTCAGAAACTTGCTGATCACATTTCTAAGTACTTTGTTCCTCTTGTCATTGGGCTTTCTGTTTCAACTTGGCTTGCTTGGTATTTAGCAGGGAAGTTGCATGCATACCCAAAATCATGGATTCCATCTTCCATGAACAGCTTTGAGCTTGCCCTTCAGTTTGGGATATCAGTCATGGTCATTGCATGCCCTTGTGCTCTAGGCCTAGCTACTCCTACAGCTGTTATGGTTGGCACTGGAGTTGGTGCAACTCAAGGTGTGTTGATCAAAGGGGGACAAGCTCTAGAAACTGCACACAAGGTGAATTGCATTGTGTTTGACAAGACAGGTACTCTCACAACTGGGAACCCGGTGGTTGTAACTACAAAGATCTTCAACAACATGTCAGTTCAACATTTCTTTGAACTTGTTGCAGCAGCAGAGGTGAATAGTGAACATCCCATAGCCAAAGCTATTGTTGAGCATGCCAAGAAGATCATCACAGAAGATGAACAGAATCATACCTGGCCAGAAGTGCGCGACTTCGTTTCCATATCAGGCCATGGAGTTAAGGCCATTGTTCAGAACAAGGAGATATTGGCTGGGAACAAAAAGCTTATGATGGATCACAACATAGCCATTTCAGTGGATGCTGAACAAGTACTAGCAGAAGCTGAGAGCCTGGCTCAAACTGGGATTTTAGTATCCTTAGATGGAGAAATAGCTGGAGTTNNNNNNNNNNATCCATTGAAACCTGATGCAAAGGAAGTTATCTCAATTCTCAAGTCCATGAAGATCAGAAGCATCATGGTCACAGGTGATAACTGGGGTACTGCCAATTCCATAGCCAGACAAGCTGGTATTGAAACTGCTATGGCAGAAGCCCAACCTCACACTAAAGCCACTCAAGTAAAAGATTTGCAGAATTCAGGCTACACAGTAGCAATGGTGGGAGATGGAATCAATGACTCGCCGGCACTAGTGGCGGCCGATGTAGGAATGGCGATTGGTGCTGGCACAGACATAGCCATTGAGGCAGCAGACATAGTTCTGATGAGGAGCAACTTGGAGGACATAATAATAGCCATAGACCTTGCAAAGAAAACCTTCAACCGTATACGCCTCAACTACATTTGGGCACTTGGTTACAACCTCTTATCAATTCCAATTGCTGCAGGCATACTTTACCCTTCCACTAGATTCAGATTGCCACCATGGATTGCTGGAGCTGCAATGGCTGCCTCTTCTATCAGTGTTGTTTGCTCCTCCCTCTTGTTGAAGAATTACAAGAGACCAAACAAGCTAAACAAGTTGGAAATAAATAGTATAAATATTGAGTGA 2838 0.4278 MSPAAAEAKAVLSVMGMTCAACAGSVEKCIKRLPGILQAVVDVFNDKARVLYYPSMLNVERICEAIEDAGYEAKLIIEEESNDDENSCDEICRVHIRGMTCTSCSSTLESALQSLRGVHTAQVALATEEAEIHYDPNIVTYDQLKEAIEDTGFESILISTGDHISNIHLKVDGIKNEQSITAIQNSLQSLPGVVNIDIYRDINKVSIAYKPYMTGPRTFIQVIESAGSGCFKAEIFPAEEGERESHKKQEIKQYFKFFIWSLVFTIPVFLTSMVLMYVPGVKHVLDIKVVNMLKLGQLLRWELATPVQFIIGRRFYIGSYKSLRKGSANMDVLIALGTNAAYFYSVYVVARAAFSRDFKGNDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLIHLTPDTAILLNQDGEEEIDSRLVQKNDVIKVVPGAKVASDGIVIWGQSHVNESMITGEARPVAKRKGDMVIGGTVNQNGVLHVKVTRVGSESALSQIVRLVESAQMAKAPVQKLADHISKYFVPLVIGLSVSTWLAWYLAGKLHAYPKSWIPSSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALETAHKVNCIVFDKTGTLTTGNPVVVTTKIFNNMSVQHFFELVAAAEVNSEHPIAKAIVEHAKKIITEDEQNHTWPEVRDFVSISGHGVKAIVQNKEILAGNKKLMMDHNIAISVDAEQVLAEAESLAQTGILVSLDGEIAGVXXXXPLKPDAKEVISILKSMKIRSIMVTGDNWGTANSIARQAGIETAMAEAQPHTKATQVKDLQNSGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMRSNLEDIIIAIDLAKKTFNRIRLNYIWALGYNLLSIPIAAGILYPSTRFRLPPWIAGAAMAASSISVVCSSLLLKNYKRPNKLNKLEINSINIE 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60790g00003 945 Gene3D - 89 158 - -
Stsc60790g00003 945 Gene3D - 385 501 - -
Stsc60790g00003 945 Pfam Heavy-metal-associated domain 12 72 IPR006121 GO:0046872
Stsc60790g00003 945 Pfam Heavy-metal-associated domain 94 154 IPR006121 GO:0046872
Stsc60790g00003 945 PRINTS P-type cation-transporting ATPase superfamily signature 816 835 - -
Stsc60790g00003 945 PRINTS P-type cation-transporting ATPase superfamily signature 763 773 - -
Stsc60790g00003 945 PRINTS P-type cation-transporting ATPase superfamily signature 447 461 - -
Stsc60790g00003 945 PRINTS P-type cation-transporting ATPase superfamily signature 839 851 - -
Stsc60790g00003 945 PRINTS P-type cation-transporting ATPase superfamily signature 611 625 - -
Stsc60790g00003 945 FunFam Copper-transporting ATPase 1, putative 385 501 - -
Stsc60790g00003 945 Gene3D - 578 873 IPR023214 -
Stsc60790g00003 945 ProSiteProfiles Heavy-metal-associated domain profile. 165 231 IPR006121 GO:0046872
Stsc60790g00003 945 FunFam ATPase copper transporting beta 86 160 - -
Stsc60790g00003 945 SUPERFAMILY Calcium ATPase, transmembrane domain M 366 605 IPR023298 -
Stsc60790g00003 945 SUPERFAMILY HMA, heavy metal-associated domain 93 162 IPR036163 GO:0046872
Stsc60790g00003 945 Pfam haloacid dehalogenase-like hydrolase 607 830 - -
Stsc60790g00003 945 PRINTS Copper-transporting ATPase 1 signature 9 34 - -
Stsc60790g00003 945 PRINTS Copper-transporting ATPase 1 signature 64 84 - -
Stsc60790g00003 945 PRINTS Copper-transporting ATPase 1 signature 35 58 - -
Stsc60790g00003 945 NCBIfam heavy metal translocating P-type ATPase 330 925 IPR027256 GO:0006812|GO:0016020|GO:0019829
Stsc60790g00003 945 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 5 940 - -
Stsc60790g00003 945 ProSitePatterns Heavy-metal-associated domain. 96 125 IPR017969 GO:0046872
Stsc60790g00003 945 FunFam Probable copper-transporting ATPase HMA5 739 873 - -
Stsc60790g00003 945 SUPERFAMILY HMA, heavy metal-associated domain 7 75 IPR036163 GO:0046872
Stsc60790g00003 945 ProSiteProfiles Heavy-metal-associated domain profile. 8 74 IPR006121 GO:0046872
Stsc60790g00003 945 ProSitePatterns Heavy-metal-associated domain. 14 43 IPR017969 GO:0046872
Stsc60790g00003 945 ProSiteProfiles Heavy-metal-associated domain profile. 90 156 IPR006121 GO:0046872
Stsc60790g00003 945 NCBIfam HAD-IC family P-type ATPase 370 895 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60790g00003 945 SFLD Haloacid Dehalogenase 593 867 - -
Stsc60790g00003 945 Gene3D - 698 746 IPR023299 GO:0000166
Stsc60790g00003 945 Gene3D - 618 697 IPR023299 GO:0000166
Stsc60790g00003 945 Pfam E1-E2 ATPase 398 589 - -
Stsc60790g00003 945 ProSitePatterns E1-E2 ATPases phosphorylation site. 613 619 IPR018303 -
Stsc60790g00003 945 SUPERFAMILY HMA, heavy metal-associated domain 162 231 IPR036163 GO:0046872
Stsc60790g00003 945 CDD P-type_ATPase_Cu-like 258 927 - -
Stsc60790g00003 945 CDD HMA 96 154 IPR006121 GO:0046872
Stsc60790g00003 945 SUPERFAMILY HAD-like 610 922 IPR036412 -
Stsc60790g00003 945 SFLD p-type atpase 593 867 IPR044492 -
Stsc60790g00003 945 CDD HMA 11 74 IPR006121 GO:0046872
Stsc60790g00003 945 FunFam Copper-transporting ATPase HMA5 7 78 - -
Stsc60790g00003 945 Gene3D - 4 75 - -
Stsc60790g00003 945 SUPERFAMILY Calcium ATPase, transduction domain A 400 497 IPR008250 -
Stsc60790g00003 945 NCBIfam copper ion binding protein 95 154 IPR006122 GO:0005507
Stsc60790g00003 945 NCBIfam copper ion binding protein 10 73 IPR006122 GO:0005507
Stsc60790g00003 945 Gene3D - 165 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60790g00003 Stsc-Chr60790 10585 16240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60790g00003 8 945 Primary Pumps ATPases AT1G63440 71.414 0.0 1391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60790g00003 K17686 - gmx:100817431 1467.21