Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60790g00001 ATGGATGGGCGAGACGCTATGTCATTCTCCAGTGGTTCTGCCTCATTCTACCTGCATAGAGGAGGAGGAGGAGGAGGAGGTGGTGGTGGTGGTGTTGGTGGTTCTCGAACACCAACACCACAACCCGGAGCTTTCCAAGGAGGACCACCTGGATTCAGGCATCTCTCAAATGTGAGAGGTTCTGGTGGTGGCTCTGCTTCGGCTGCATCTGCATTTTCAGCAGAGCCTCCTCATCCCAATTTTGGCCATGGAATCAGCATAGGCTCCTCTTCCCCTGCTGGAGGTGGTGCAGGAGGAGGTGGAAGTGGTGGTGGTGGCGGTGCACCTCCTCCATCTTCAGGGGAGCCTGTGAAGAAGAAAAGAGGGAGGCCAAGAAAGTATGGTCCTGGTGGACCAGTTTTGAGGCTCACTGCCACTGCTAATAACTCTCCTGGCTCCGGTGGTACTCCCTTGGAGAAGAAGCGGCGTGGGCGCCCCCCTGGAAGTGGAAGGAAGCAGCAGCTAGCTTCTCTTGGTGAATGGATGAACAGTTCTGCGGGGATGGCCTTCTCACCGCATGTTATAAGTGTTGAATCTGGGGAGGACATTGTAGCAAAGTTATTGTCATTTGCACAGCAGAGACCAAGGGCTTTATGCATCATGTCTGGTACTGGAATAGTTTCTTCGGTCACTATGCGTCAGCCTGCTTCGAATACTCCCAGTGTTACTTATGACGGACGATTTCAAATTTTATGCTTGTCTGGTTCTTATTTGGTTGCGGAAGATGGCGGAGCTCGTAGTAGAACAGGCGGCATCAGTGTTTCCCTTTCTAGTCCCGAGGGTCATGTTATTGGTGGTGGCGTTGCTGCGCTTATTGCCTCAACCCCAGTGCAGGTGGTGGTATGCAGTTTTGTATACGGTGGCAGCTCTAAGGCAAAGCCTAAGCAACTGACAAGCGCAAAAGATAGCGGTTCGGAGCCTCAGAGTAGCGACAGGTTAGCTTCTCCGGCAAGTGCACCTCCTCCTAATCAGAACTACAACTCATCTTCTTCGGCCGTAGCCATGTGGCCTGGTTCACAGCCGAGTGATCTGAAAAGTGCACATCCACACACTGGTATTGACTTGACTCGTGGATGA 1116 0.5251 MDGRDAMSFSSGSASFYLHRGGGGGGGGGGGVGGSRTPTPQPGAFQGGPPGFRHLSNVRGSGGGSASAASAFSAEPPHPNFGHGISIGSSSPAGGGAGGGGSGGGGGAPPPSSGEPVKKKRGRPRKYGPGGPVLRLTATANNSPGSGGTPLEKKRRGRPPGSGRKQQLASLGEWMNSSAGMAFSPHVISVESGEDIVAKLLSFAQQRPRALCIMSGTGIVSSVTMRQPASNTPSVTYDGRFQILCLSGSYLVAEDGGARSRTGGISVSLSSPEGHVIGGGVAALIASTPVQVVVCSFVYGGSSKAKPKQLTSAKDSGSEPQSSDRLASPASAPPPNQNYNSSSSAVAMWPGSQPSDLKSAHPHTGIDLTRG 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60790g00001 371 SUPERFAMILY AF0104/ALDC/Ptd012-like 182 299 - -
Stsc60790g00001 371 MobiDBLite consensus disorder prediction 303 371 - -
Stsc60790g00001 371 Gene3D - 185 314 - -
Stsc60790g00001 371 Pfam Plants and Prokaryotes Conserved (PCC) domain 185 298 IPR005175 -
Stsc60790g00001 371 ProSiteProfiles PPC domain profile profile. 178 318 IPR005175 -
Stsc60790g00001 371 CDD DUF296 185 297 IPR005175 -
Stsc60790g00001 371 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 71 342 IPR039605 GO:0003680
Stsc60790g00001 371 MobiDBLite consensus disorder prediction 305 350 - -
Stsc60790g00001 371 MobiDBLite consensus disorder prediction 1 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60790g00001 Stsc-Chr60790 2773 5891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60790g00001 1 371 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 47.970 1.08e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60790g00001 - - aip:107643074 513.457