Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60789g00003 ATGCAGAATAATCAGTATGTAACACCTCCACCACTTGGAACTGGGTATGCTACGGCACCCCCTCCTTATCCATATCCAGATCCTTACTGCAGAAATATTTTTGCTTCGAACGATGCACAGCCATATCCCCCACAGCCATATGGTGGACATCCAATGTTAATGGGAATTCAGCAAGCTGGTGTTCCTTTGCCATCTAATGCAATTGAGGAGCCTGTGTTTGTCAATGCAAAGCAGTATCATGGTATCTTAAGACGTAGGCAATCCCGTGCTAAAGCTGAATCAGAAAATAAGGCTATCAGGAATCGTAAGCCATACCTTCATGAATCTCGACATCAACATGCACTGCGAAGAGCAAGAGGATGTGGAGGCCGGTTTCTGAATTCAAAGAAAGATGAGAATCAACAGGATGACAAATCACACTCGGACCACAATCTCAATCCTGACAAAAACAATCTTGCACCATCAGATAGAGCATCCTAA 480 0.4396 MQNNQYVTPPPLGTGYATAPPPYPYPDPYCRNIFASNDAQPYPPQPYGGHPMLMGIQQAGVPLPSNAIEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHQHALRRARGCGGRFLNSKKDENQQDDKSHSDHNLNPDKNNLAPSDRAS 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60789g00003 159 MobiDBLite consensus disorder prediction 1 21 - -
Stsc60789g00003 159 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 70 125 IPR001289 GO:0003700|GO:0006355
Stsc60789g00003 159 Gene3D - 68 129 - -
Stsc60789g00003 159 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 145 IPR001289 GO:0003700|GO:0006355
Stsc60789g00003 159 SMART cbf3 67 128 IPR001289 GO:0003700|GO:0006355
Stsc60789g00003 159 MobiDBLite consensus disorder prediction 85 159 - -
Stsc60789g00003 159 PRINTS CCAAT-binding transcription factor subunit B signature 71 93 IPR001289 GO:0003700|GO:0006355
Stsc60789g00003 159 PRINTS CCAAT-binding transcription factor subunit B signature 102 125 IPR001289 GO:0003700|GO:0006355
Stsc60789g00003 159 ProSitePatterns NF-YA/HAP2 subunit signature. 73 93 IPR018362 GO:0003677|GO:0016602
Stsc60789g00003 159 MobiDBLite consensus disorder prediction 124 145 - -
Stsc60789g00003 159 ProSiteProfiles NF-YA/HAP2 family profile. 68 128 IPR001289 GO:0003700|GO:0006355
Stsc60789g00003 159 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60789g00003 Stsc-Chr60789 47058 48783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60789g00003 13 159 CCAAT-HAP2 Transcription Factor Family AT1G30500 63.758 1.29e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc60789g00003 CBFB_NFYA 2.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60789g00003 K08064 - gmx:100809036 240.736