Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60786g00011 ATGGGCAATCAGAAGCAAAAATGGACGCAGGATGAAGAAGACGCTCTCATCGCCGGTGTTGAGAAGCACGGTCCTGGCAAGTGGAAGAACATCCTCAAAGATCCCCAATTCGCACCTTTCCTCACTTCACGTTCCAACATCGACCTCAAGGATAAGTGGCGAAACTTGAGTGTTAGCAATGGCACTCAAGGGTCCAAAGAAAAATCTAGGGTTCCGAGAATCAAAGCTGCTGCTCCTGCTACTGCTACCCCTGTTGCTGCTTGTAATGCCGTTGTTGCTGCTGGGGAAGATGCTACTCCTGTCACCAATGCGACTCATCAACCTGATCCTTCTTCTGTTGCTGTGGGTGATTCCTCTCAATATGAAGAAGATGCCAAGAATCCTCCGCGGTACAATGCAATGGTTCTTGAAGCGCTGTCAGCTCTGAAAGATGCTAATGGATCTGACCTGAATGCCATTGTTAATTATATTGAGCAAAAACACAAGGTTCCTCAGAATTTCCGAAGGGCATTGAGTACAAGGTTGAGGAGACTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAACTGTTACAAGATTAAAAAGGAATCTTCATCCTTGCCAAAATCACCAGTTGCTGTGAAAAAAGATGTGTGGCCACAACGGCAACAACCACAACCACCCCCTGAGTTTGTGGCAACTAATGAGACAATAAAGGAAGCTGCTGAAACTGCTGCCTACAGAATTGCCGAGGCTGAAAGCAAGTCATATTTAGCCGCTGAAGCAGTCAAGGAAGCAGAACGAATTGCACTATTAGCCGAAGATGCTGAGGCGATGTTACAGCTAGCACAACAGATTTATGATGCTTGTTCGCGCGGGGAATCTGTCGTCTTGGCATCTTAA 882 0.4626 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGTQGSKEKSRVPRIKAAAPATATPVAACNAVVAAGEDATPVTNATHQPDPSSVAVGDSSQYEEDAKNPPRYNAMVLEALSALKDANGSDLNAIVNYIEQKHKVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKESSSLPKSPVAVKKDVWPQRQQPQPPPEFVATNETIKEAAETAAYRIAEAESKSYLAAEAVKEAERIALLAEDAEAMLQLAQQIYDACSRGESVVLAS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60786g00011 293 MobiDBLite consensus disorder prediction 100 118 - -
Stsc60786g00011 293 MobiDBLite consensus disorder prediction 202 223 - -
Stsc60786g00011 293 SMART h15plus2 125 190 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc60786g00011 293 Gene3D - 124 210 IPR036388 -
Stsc60786g00011 293 FunFam Telomere repeat-binding factor 1 8 86 - -
Stsc60786g00011 293 FunFam Telomere repeat-binding factor 1 2 58 - -
Stsc60786g00011 293 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Stsc60786g00011 293 FunFam Telomere repeat-binding factor 1 123 204 - -
Stsc60786g00011 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Stsc60786g00011 293 Pfam linker histone H1 and H5 family 129 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc60786g00011 293 SMART sant 4 59 IPR001005 -
Stsc60786g00011 293 Gene3D - 8 84 - -
Stsc60786g00011 293 SUPERFAMILY "Winged helix" DNA-binding domain 126 201 IPR036390 -
Stsc60786g00011 293 MobiDBLite consensus disorder prediction 100 126 - -
Stsc60786g00011 293 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Stsc60786g00011 293 PANTHER SINGLE MYB HISTONE 4 1 291 IPR044597 GO:0003691
Stsc60786g00011 293 CDD H15 129 209 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc60786g00011 293 CDD SANT_TRF 6 56 - -
Stsc60786g00011 293 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 127 195 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc60786g00011 293 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60786g00011 Stsc-Chr60786 38443 40740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60786g00011 1 291 Single Myb Histone (SMH) Gene Family AT1G17520 48.797 1.09e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc60786g00011 Linker_histone 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60786g00011 K09422 - gmx:780537 368.622