Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60786g00008 ATGGATCATTACAAGGTTCTAGGGTTACACAGAACCGCATCAAAGGCAGAGATCAAAGCTGCCTTCCAGAAATTGGCCTTTCAATTCCATCCAGACAAGCACTCCCACTCCCCCAAGGTCGTCAGGGACAACGCCACCCTTCGATTCAAGCAGGTCTCCGAGGCCTATGAGGTCCTCATGGACGATCGCAAGCGCGCCGATTACAATTTCCGATCCCGCTCCACCGCTGGTACCGGCAGTTACTATTCGCAGTATTCTTATGGATACGCTAGGGGTGGGAGTAGTAGCTATGAACAAAGGTCTAGGCATAAATATGGTGGCGGCGGCGGCGGTGGCATTGCTTCCAAGTTTGAGCTTGTTGTTCGAATTTTGAGTGCGCGATCTTCTCTTCTCAATCTCGGCTTTGCAGCAGCTATATTGGGTGGAATAGTTGTCATTGATAAAAGTGGAGAATCATTGTGGGAGAGGCAAAATTCTGGGAAATCATTTGAAGAAGCCATGAAGTCTATTGAGAAAGCCAAAACATATAGAGATGATAGCGTGAAGGAACGTACGTGA 558 0.4821 MDHYKVLGLHRTASKAEIKAAFQKLAFQFHPDKHSHSPKVVRDNATLRFKQVSEAYEVLMDDRKRADYNFRSRSTAGTGSYYSQYSYGYARGGSSSYEQRSRHKYGGGGGGGIASKFELVVRILSARSSLLNLGFAAAILGGIVVIDKSGESLWERQNSGKSFEEAMKSIEKAKTYRDDSVKERT 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60786g00008 185 SMART dnaj_3 1 64 IPR001623 -
Stsc60786g00008 185 FunFam DnaJ domain protein 1 89 - -
Stsc60786g00008 185 SUPERFAMILY Chaperone J-domain 1 87 IPR036869 -
Stsc60786g00008 185 CDD DnaJ 2 61 IPR001623 -
Stsc60786g00008 185 Gene3D DnaJ domain 1 91 IPR036869 -
Stsc60786g00008 185 Pfam DnaJ domain 2 69 IPR001623 -
Stsc60786g00008 185 PRINTS DnaJ domain signature 44 64 IPR001623 -
Stsc60786g00008 185 PRINTS DnaJ domain signature 93 112 IPR001623 -
Stsc60786g00008 185 PRINTS DnaJ domain signature 4 22 IPR001623 -
Stsc60786g00008 185 PRINTS DnaJ domain signature 22 37 IPR001623 -
Stsc60786g00008 185 PANTHER CO-CHAPERONE PROTEIN DJLA 4 101 - -
Stsc60786g00008 185 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
Stsc60786g00008 185 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60786g00008 Stsc-Chr60786 30952 33382 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60786g00008 3 69 C2H2 Transcription Factor Family AT1G74250 40.299 9.11e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60786g00008 - - gmx:100782769 268.855