Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60786g00007 ATGGAGCCTCGAGTTGGCAACAAGTTCCGTATCGGCCGCAAAATTGGTAGCGGATCCTTCGGAGAGATCTATCTCGGTACTAATATTCAGACAAATGAAGAGGTTGCGATTAAGCTTGAAAATGTCAAAACCAAGCACCCTCAGTTGCTGTATGAATCAAAGCTGTATAAAATACTGCAAGGAGGAACTGGGATCCCGAATGTGAAATGGTATGGCGTAGAAGGAGAGTACAATGTTCTTGTGATGGATTTACTGGGGCCTAGTCTTGAGGATTTATTCAATTTCTGTAGTCGGAAATTGTCTCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAATTTGTTCATTCAAAATCATTTTTGCATCGGGATATCAAACCAGACAATTTCCTCATGGGTTTAGGGAGGCGTGCGAATCAAGTGTATATCATTGACTTTGGTCTTGCTAAGAAATACAGAGATACTTCTACACATCAGCATATTCCTTACAGAGAGAATAAGAATTTGACAGGAACTGCTAGGTATGCTAGCATGAATACTCATCTTGGAATTGAGCAAAGCCGCAGGGATGATTTGGAGTCACTTGGATATGTTCTTATGTATTTTTTAAGAGGAAGTCTACCTTGGCAGGGACTAAAAGCAGGAAATAAGAAACAGAAATATGAAAAAATCAGTGAGAAGAAAGTTTCTACTTCAATTGAGTCTCTCTGTCGTGGTTATCCCTCTGAATTTGCGTCATACTTTCATTACTGTCGGTCACTTAGGTTTGATGATAAACCAGATTACGCATATTTGAAAAGACTTTTCCGTGACCTTTTCATCCGTGAAGGATTCCAGTTTGATTATGTGTTTGATTGGACCATATTGAAATATCAGCAATCTCAAATTGCCACTCCTCCTGCCCGTGGCGTGGTTCCTGCTGCTGGACCAAGTTCTGGCATGCCATCAGCTGTTTTGAATGCTGACGGACAGTCAGGTGAAGATGGTAGGCGTATTGGTTGGTCTTCATCAGATCCTACCCGTAGAAGACACTCTGGACCTATTGCTAATGATGGAATCTTATCTAGACAAAAAGCCCAACTAATAAATGACTCAACTGGGTCTAAAGATGCTATGTTGCCAAGTTCTAATTTCTTCCTCTCAAGTGGATCTAACAGGCGAGGTGCTTTACCCAGCAGCCGTGATGCGCTCATTGGCGGTGAGACAGAGCCATCGCGTCCTATCACTATGGAATCTACTCAGGGTGCACTTCGAAAAATATCTGGCCCTCAAAGAAGTTCACCCATCACGTCATCTGAGCTCAACCGACCATCCTCTGGCAGAAACCCAGCAAGCAGAAAGAATTTGGAGTCAACTCTTAAAGGCATAGAGAGCCTGCATTTCAATGATGAGAGGGCACAGTATTAG 1419 0.4242 MEPRVGNKFRIGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYKILQGGTGIPNVKWYGVEGEYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGNKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPPARGVVPAAGPSSGMPSAVLNADGQSGEDGRRIGWSSSDPTRRRHSGPIANDGILSRQKAQLINDSTGSKDAMLPSSNFFLSSGSNRRGALPSSRDALIGGETEPSRPITMESTQGALRKISGPQRSSPITSSELNRPSSGRNPASRKNLESTLKGIESLHFNDERAQY 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60786g00007 472 FunFam Putative Casein kinase I 1 85 - -
Stsc60786g00007 472 MobiDBLite consensus disorder prediction 384 472 - -
Stsc60786g00007 472 CDD STKc_CK1_delta_epsilon 8 282 - -
Stsc60786g00007 472 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
Stsc60786g00007 472 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60786g00007 472 Pfam Protein kinase domain 10 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60786g00007 472 PANTHER CASEIN KINASE-RELATED 9 383 - -
Stsc60786g00007 472 MobiDBLite consensus disorder prediction 305 360 - -
Stsc60786g00007 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Stsc60786g00007 472 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60786g00007 472 MobiDBLite consensus disorder prediction 410 456 - -
Stsc60786g00007 472 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Stsc60786g00007 472 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Stsc60786g00007 472 FunFam Casein kinase I isoform delta-like 1 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60786g00007 Stsc-Chr60786 22054 26240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60786g00007 7 228 CBL-interacting serine-threonine protein kinases AT5G58380 28.514 7.26e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Stsc60786g00007 Pkinase 2.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60786g00007 K02218 - gmx:100778165 803.897