Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60786g00005 ATGGCACACAAGAGGATAAGAGAACGGCTTCGGAGAAGCGCTCTTTACACATTTGCATGTCTGGGAACACGAACAAGAGATGACGACCAACCCCACGCGCTACACGGCGCTGGATACACGCGCACCGTGCAATGCAACCAGCCACACCTTCACGAAAACAAACCCCCTTATTATTGCAAGAACCACATTTCCACAACCAAATATAACGTCATCACGTTTCTTCCAACCGCACTCTTTGAACAATTCAGAAGGGTCGCTAATATCTACTTCCTTTTAGCGGCACTTCTCTCTGTTTTCCCGATCTCGCCTTTTAGTCCGATAAGCATGATCGCTCCCTTGGCCTTCGTCGTCGGGCTTAGCATGGCAAAGGAAGCTTTGGAAGATTCTAGAAGGTTCCTTCAGGATCGCAAGGTTAATAATCGGAACGTAAGTCACCATGCTGGGAATGGCGTTTTTGAACCTAAGGCATGGAAGGATATTAGGGTTGGGGATGTTGTTAAGGTAGAAAAAGATGAATTCTTCCCAGCTGATTTACTTTTCTTGTCATCAAGCTACGAGGATGGGATTTGTTACGTTGAGACAATGAATTTAGATGGAGAGACTAATCTCAAGGTGAAAAGATCTCTTGAAGCTACCTTGGGTCTTGATAGCGATGAAACTTTCAAGGATTTTACAGGAACAATTCAAGGCGAAGATCCGAATCCTAGGTTCATGGTAAAGACTAAGTACAAGGCTCCAAGCTCGTGGTTCTTGAGGCCTGATAACATTGAAGTCCAGTATGATCCACAGAAGCTTGGTTTGGCTGGGTTGAGTCATTTGGTTACCGCACTCATTCTTTACGGCTACCTGATACCGATATCACTTTATGTATCCATTGAAATCGTGAAAGTATTACAAGCAAGCTTTATTAATAAGGATATTCACATGTATGATGAAGAAACGGGAACCGCAGCTGATGCGAGAACTTCGAATTTGAATGAAGAGTTGGGACAAGTTGACACCATACTTTCTGATAAAACCGGGACTTTAACGTGCAACCAGATGGACTTCTTGAAATGCTCCATTGCCGGTGTGGCGTACGGTGTGCGTGCGAGCGATGTGGAACTGGCGGCGGCGAAGCAAATGGCGTCCGATGTTGATAATGATTCGGAGAGTGATGGTTATGAGAATAGTGGGGGTTTGGAGAGTTCAAAAAAGGCTCCAATTAAAGGATTTGGGTTTGAGGATGATCGTTTGATGAATGGAAAGTGGGTGAAAGAGGCTAATGTTGATGATCTTTTGTTGTTTTTTCGGATATTGGCGGTTTGCCATACTGCGATTCCTGATTATAATGAAGTGACTGGGGCTTTTACATATGAGGCAGAGTCACCTGATGAAGGTGCTTTTCTTGCTGCGGCAAGAGAATTTGGGTTTGAGTTTTGTAGGAGGACTCAGTCAAGTGTTTTCATACGTGAGAAATATACTAATCATGGAAAAGTGGTTGAAAGAGAATTCAAACTGTTGAATTTGCTTGATTTCTCTAGCAAAAGAAAACGTATGTCAGTGATTGTGCGAGATGAAGATGGAAACATTATTCTTATGTGCAAGGGGGCTGACAGTATCATATTTGATCGTTTGGCAAAGAATGGAAAGAAGTATTTGGAATCTACAACAAGGCACTTAAATGAATATGGAGAAGCCGGGTTGAGAACGCTAGCCTTGTCTTATAAGAGGCTTGGTGAAGAAGAATATTCAGCTTGGAACAATGAGTTTCAGAAGGCCAAAACATCTGTTGGGGTTGATAGAGAAGCAACTCTTGAAAGGGTTTCAGAGATGATGGAAAAAGACTTGATACTTGTTGGGGCTACAGCTGTTGAAGATAAACTTCAAAAAGGGGTTCCCCAGTGCATTGACAAACTTGCCCAGGCGGGGCTTAAGATCTGGGTATTGACAGGTGATAAAATGGAAACAGCAATAAACATTGGATTCGCATGCAGTTTGCTACGACAGGGCATGCAGCAGATCTGCATAACTGTTCCAAATTTAGAAGCAATGAGTGCCAGTGATAGCACCAAAGAGGCCATCAAAGATAACATTTTGAACCAAATTACGAATGCATCACAAATGATAATGCTAGAGAAGGATCCTCATGCTGCATTCGCATTAATTATTGATGGAAAAACTTTGACCTATGCTTTAGAAGATGATATGAAGCAACTCTTCCTTGCTTTGGCCGTTGATTGTGCTTCAGTCATTTGCTGTCGTGTCTCTCCCAAGCAAAAGGCTTTGGTAACAAGGTTAGTGAAAGAAGGAACCAAGAAGACCACCCTAGCAATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCAGATATTGGTGTTGGAATCAGTGGGGTTGAAGGGATGCAGGCGGTGATGGCCAGTGACTTTTCTATTGCCCAGTTTCGGTTTTTAGAGAGACTTTTGGTAGTCCATGGACACTGGTGTTATAAAAGAATTGCACAAATGATATGTTATTTCTTCTACAAGAACATAGCATTTGGACTAACCATCTTCTACTTTGAGGCCTTCACAAGCTTTTCTGGCCAATCGGTTTATGATGACTGGTACATGATACTTTTCAACGTTGTTCTCACATCCTTGCCTGTCATTTCTCTTGGTGTTTTAGAGCAAGATGTTCCCTCAGAAGTTTGCTTGGAGTTTCCTGCCCTGTATCAGCAAGGACCAACAAATTTGTTCTTTGATTGGTATAGAATTCTGGGATGGATGGCCAACGGTGTTTACTCTTCATTAGCCATCTTCTTCTTTACCATCGTAATCTTCTACGACCAAGCATTCCGGTCCGACGGCCAAACAGCCGACATGGCCGCCGTCGGCACCGCAATGTTCAGCAGCATAATTTGGGCCGTGAACTGTCAAATAGCCCTAACAATGAGCCATTTCACATGGGTTCAACATGTTTTCGTTTGGGGAAGCATAGCCACTTGGTACATCTTTCTCTTCTTTTATGGTGCACTTTCACCAACATATTCCAAGACTGCCTATCAAATACTGGTTGAATCGCTTGGACCTGCCCCGATTTATTGGATTGCAACGTTCTTGATAGCAGTTTCTTGCTTCCTTCCATATCTGACTCACATAGCCATCCAGAGATGTTACAATCCCATGGATCATCATATTATTCAAGAGATTAAGTACTACAAGAAGGATCTTGAAGATAAGCACATGTGGAAGAGGGAGAAATCTAAGGCCAAACAAGAGACAAAGATTGGATTCACTGCAAGAGTTGATGCCAAAATCAGACAGTTGAAAGAAAGGCTGCATATAAAGCAACAGCAACATTCTCATAACCTAACCAATTCACCCCAACAACAACAACAACACAACCTATTGTAA 3381 0.4271 MAHKRIRERLRRSALYTFACLGTRTRDDDQPHALHGAGYTRTVQCNQPHLHENKPPYYCKNHISTTKYNVITFLPTALFEQFRRVANIYFLLAALLSVFPISPFSPISMIAPLAFVVGLSMAKEALEDSRRFLQDRKVNNRNVSHHAGNGVFEPKAWKDIRVGDVVKVEKDEFFPADLLFLSSSYEDGICYVETMNLDGETNLKVKRSLEATLGLDSDETFKDFTGTIQGEDPNPRFMVKTKYKAPSSWFLRPDNIEVQYDPQKLGLAGLSHLVTALILYGYLIPISLYVSIEIVKVLQASFINKDIHMYDEETGTAADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGVAYGVRASDVELAAAKQMASDVDNDSESDGYENSGGLESSKKAPIKGFGFEDDRLMNGKWVKEANVDDLLLFFRILAVCHTAIPDYNEVTGAFTYEAESPDEGAFLAAAREFGFEFCRRTQSSVFIREKYTNHGKVVEREFKLLNLLDFSSKRKRMSVIVRDEDGNIILMCKGADSIIFDRLAKNGKKYLESTTRHLNEYGEAGLRTLALSYKRLGEEEYSAWNNEFQKAKTSVGVDREATLERVSEMMEKDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMQQICITVPNLEAMSASDSTKEAIKDNILNQITNASQMIMLEKDPHAAFALIIDGKTLTYALEDDMKQLFLALAVDCASVICCRVSPKQKALVTRLVKEGTKKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFTSFSGQSVYDDWYMILFNVVLTSLPVISLGVLEQDVPSEVCLEFPALYQQGPTNLFFDWYRILGWMANGVYSSLAIFFFTIVIFYDQAFRSDGQTADMAAVGTAMFSSIIWAVNCQIALTMSHFTWVQHVFVWGSIATWYIFLFFYGALSPTYSKTAYQILVESLGPAPIYWIATFLIAVSCFLPYLTHIAIQRCYNPMDHHIIQEIKYYKKDLEDKHMWKREKSKAKQETKIGFTARVDAKIRQLKERLHIKQQQHSHNLTNSPQQQQQHNLL 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60786g00005 1126 NCBIfam HAD-IC family P-type ATPase 743 854 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60786g00005 1126 Pfam Phospholipid-translocating P-type ATPase C-terminal 800 1050 IPR032630 -
Stsc60786g00005 1126 MobiDBLite consensus disorder prediction 1106 1126 - -
Stsc60786g00005 1126 SFLD p-type atpase 320 823 IPR044492 -
Stsc60786g00005 1126 SUPERFAMILY HAD-like 324 816 IPR036412 -
Stsc60786g00005 1126 NCBIfam phospholipid-translocating P-type ATPase 240 1058 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc60786g00005 1126 MobiDBLite consensus disorder prediction 1108 1126 - -
Stsc60786g00005 1126 Gene3D - 481 613 IPR023299 GO:0000166
Stsc60786g00005 1126 Pfam Cation transport ATPase (P-type) 436 539 - -
Stsc60786g00005 1126 PRINTS P-type cation-transporting ATPase superfamily signature 772 791 - -
Stsc60786g00005 1126 PRINTS P-type cation-transporting ATPase superfamily signature 336 350 - -
Stsc60786g00005 1126 FunFam Phospholipid-transporting ATPase 613 812 - -
Stsc60786g00005 1126 SFLD C1.7: P-type atpase like 320 823 - -
Stsc60786g00005 1126 SUPERFAMILY Calcium ATPase, transduction domain A 147 212 IPR008250 -
Stsc60786g00005 1126 Gene3D - 614 812 IPR023214 -
Stsc60786g00005 1126 SUPERFAMILY Calcium ATPase, transmembrane domain M 57 1048 IPR023298 -
Stsc60786g00005 1126 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 343 577 IPR023299 GO:0000166
Stsc60786g00005 1126 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 37 237 - -
Stsc60786g00005 1126 Gene3D - 114 240 - -
Stsc60786g00005 1126 Pfam Phospholipid-translocating ATPase N-terminal 43 110 IPR032631 -
Stsc60786g00005 1126 ProSitePatterns E1-E2 ATPases phosphorylation site. 338 344 IPR018303 -
Stsc60786g00005 1126 FunFam Phospholipid-transporting ATPase 480 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60786g00005 Stsc-Chr60786 12257 18872 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60786g00005 1 235 Primary Pumps ATPases AT1G17500 65.106 7.58e-95 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60786g00005 K01530 - gmx:100819559 1457.58