Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60773g00001 ATGTCTGAAGCTTTGATCAATGGCTTGGCTGGAGCCGGTGGAGGGATCATAGCTCAGCTCATCACATACCCTCTTCAAACTGTAAACACTCGTCAACAAACAGAGCGTGATCCAAAGAAGGATAAGAGCAAAAACATAGGAACTCTCCAGCAAATGTGCCAGGTTGTGAAACATGAGGGGTGGGAGCGGTTGTACGGAGGTTTGACGCCATCTCTAGTGGGTACAGCTGCATCTCAGGGTGTTTATTATTATTTCTATCAAATATTCAGGAACAAAGCCGAAGTGGCTGCACTAGAACAGAAGAGGCTAGGCATTGGTGATGGATCAGTTGGGATGTTCTCGTCACTTATTGTTGCTGCTTTATCTGGGTGTGTTAATGTGCTATTGACAAATCCCATATGGGTAGTTGTTACACGTATGCAGACGCACAAAAAAGAGTCAAGAAGAACTTCACCTGGTGATGCGTTGTTAAATCCCACTGAGCAAGCAATACTTCCTGCAGTTGAGCCTCTTGCTTATGGAACTAGCGATGTGATTCAAGAAGTCTACGGTGAAGCCGGAGTTTGGGGGTTTTGGAAAGGTGTATTACCGACATTGATCATGGTAAGCAACCCTTCTATACAATTCATGCTGTATGAAACTATGTTGCTGAAGTTAAAACGAAGACGTGCCCAAAGTACGAACGGTAGCAATGGGGTATCTGCATTGGAGGTATTTCTTCTTGGAGCTTTGGCTAAGCTTGGAGCTACTATTGTGACATATCCTCTTCTAGTTGTGAAGGCAAGGCTGCAAGCTAGACAGGTCAAAAATGGAGACAAGAGACACCATTATAAAGGTACATTGGATGCTATTATCAAGATGATCCGCTATGAAGGGTTTTATGGATTTTACAAAGGCATGGGAACCAAGATTGTTCAAAGTGTGCTGGCTGCTGCTGTTTTGTTCATGGTGAAGGAAGAACTAGTTAAACAAACTCGTTTCTTGCTCACTAAGAAAGCCACCAACTCTATAAAACCAAAGCTTGTGTGA 1029 0.4354 MSEALINGLAGAGGGIIAQLITYPLQTVNTRQQTERDPKKDKSKNIGTLQQMCQVVKHEGWERLYGGLTPSLVGTAASQGVYYYFYQIFRNKAEVAALEQKRLGIGDGSVGMFSSLIVAALSGCVNVLLTNPIWVVVTRMQTHKKESRRTSPGDALLNPTEQAILPAVEPLAYGTSDVIQEVYGEAGVWGFWKGVLPTLIMVSNPSIQFMLYETMLLKLKRRRAQSTNGSNGVSALEVFLLGALAKLGATIVTYPLLVVKARLQARQVKNGDKRHHYKGTLDAIIKMIRYEGFYGFYKGMGTKIVQSVLAAAVLFMVKEELVKQTRFLLTKKATNSIKPKLV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60773g00001 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 92 IPR018108 -
Stsc60773g00001 342 Gene3D Mitochondrial carrier domain 4 329 IPR023395 -
Stsc60773g00001 342 SUPERFAMILY Mitochondrial carrier 4 320 IPR023395 -
Stsc60773g00001 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 110 218 IPR018108 -
Stsc60773g00001 342 Pfam Mitochondrial carrier protein 234 322 IPR018108 -
Stsc60773g00001 342 Pfam Mitochondrial carrier protein 6 91 IPR018108 -
Stsc60773g00001 342 Pfam Mitochondrial carrier protein 110 219 IPR018108 -
Stsc60773g00001 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 324 IPR018108 -
Stsc60773g00001 342 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 330 IPR044712 GO:0006862|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60773g00001 Stsc-Chr60773 30522 34900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60773g00001 24 336 Chloroplast and Mitochondria Gene Families AT1G25380 29.022 1.06e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60773g00001 K13354 - gmx:100775784 533.487