Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60771g00006 ATGGCAGGAAACTTCAGATTCCCAATGGACCAAAAGGATATCCTTAGATTCTTGACTACGACCACCGATAGTTTCATTCAGGATCGATTAATCGACAAAGAACTAAGAGCTCAGCACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGGAAGTTCTGAAAAGGACACTGAGGTAGAGTACTCTGATCAAGCAGTGTTAGCAAATCTTGATTGGGGTATTGAAGCTCTTGAAGAAGCTATCAATACTTATAACACCGAAACTAAGCTCGCCAGACTCGATTATGCTGAGAAGATGCTACAAGTTTGTGCAATGCTGAATCCTAAGCAAAAGACTGCTGGAGTGCCAAACTTCTACCTCTCAGCTTGGGCACATTTGAACCTATCATACCTATGGAAGTTGAGGAACAACATTCAGAATTGTGTTCTTCATGCTATTGACATGTTCATCATTGATCCTTTCTTTGCTAGGATTGACTTTGCTCCGGAACTCTGGAAAACTCTGTTCCTTCCACATATGAGCTCTATTGTAGGGTGGTATTCAGAGGAGAGGCACAAGCTTATGATGGAAGTAATACCTGAAACTTCTGATTTTTCTGTTACGGCTGATTTTGATCAACTTTTCAATGAATCCTTGGTATTCTCTATGAGGCCAAATCAGTTAGATAAGTTGCAAAAACTGGAGCAGCTTTATGGAGAGTCTTTGGACGAGAACACACGGCTATATGCAAAGTACTATAAGGATTGCTTGAACTCTGATGCCACCACATCAAGCAAGAAGGTTGCTCCAATGATGCCAATTGCTGAGCCCCCAATGACTCCTTTACATGAGTTGAGCAGATCAGTTCCTGATTATGTGAAATTCGGGCCGATTTTGCCTAAGAGTGCTGGCTTTTCTTTGATGTCAGCACCAAAAGATGATGTAAATGAAAAAACCAGAGATAATCCATCCAGCCATTCCAAGGTGGAAAGTTCATCTATGTGGGGTACTAAGGAGAGCATCATTGAAGAGAATGAAAATGAAAATGAAGATGATGACTCAGATTCTGAACTTGATGATGCATCTATGGATTCTGCTAACAAAAGTAACATTTTCTCGCCTGAAAGGAAGGCGATCAAGGACGAAAATATTGAGCCAAAAGTGCATCTATCAAACCAAAGGAATAAAATATATTCTCCTAGTGTCTCCTCTCCCTTGGACTCTCCAAGAACTCCTCAAGACAATTCATCAACAAATCCTCACATGCGCAGCAAAAGAGAGCCGAAGTACCTGCGCTTATTGTCTAGTCGTTTAAGGGACTCGATTATTTCCGACTCTTTAACATCATCACCAGACCTGAGCAATGATCACATTTTGAACTCTGATCATGAAATGATGGCCATGAAGAACATTAAGAAGAAAGACTATAATAGAATGCCATGTATGAGTCATGAAAATGAGGATAGCCTGGTGCTAAATGACAGTTCCTTTTGTGAAAGTGAGGAGGGATATCATGGATGCATTTCATTGCCCAAATTAGAGAAGCAGACTACCGGATCAAAACCGCCGAAAGATTTTGTATGTCCGATCACAGGTCAGATATTTTGTGATCCTGTCACCCTTGAAACAGGCCAGACCTATGAAAGAAAAGCCATTCAAGAGTGGCTCAAAACAGGAAACACAACATGCCCCATCACGCGACAGCCTCTATCCGCAAGCATGTTACCTAAAACAAACTATGTTTTGAAGAGATTGATAACATCCTGGAAAGAACAACATCCTGAACTAGCTCAGGAGTTCTCAAATTCTAACACCAACACGCCAAGGGGTTCTTCCTGTTCTCCCTTGGGGAAAGACACCTCAATGCTGTCCATTTCACAAAAGACACCTGACTCAACAACTCATAAGAACAAAGAGGATTATATCATACAAAGGAGCAAAAGATTTATGCAGGTTGCTTCAACATCTCCAACTAGTGTGCTATCTCAAGCAGCAGTTGAAACAATTTTGAATTCCATGAAACCGTACATTTCAAGTCTCTGCACATCAGAAAACTTACAAGAATGTGAAGAAGCTGTGTTGGAAATTGCTAGATCATGGAAGGATGCAAAGAGTGATCCTCAGATTCATTCTTATTTATCAAAACCAACTGTCATAAACGATTCTGATTTTGATTGTTTGGCTGCTCTGCTCAAGAATGGTTTGGCTGAGGCAGCACTTCTGATATATCTGTTAAGACCTGTTTTTGCTCAGCTGTCAGCCCATGAGCTTATACCCTCTCTAATCCAAGTGATTCAGAACAAAAATGAGAAGTTGGATGATTACCAGTTAGTTATGGACCCCAGAGATGCTGCGGTAGCAATTCTTGAACAAATTTTAGTGGGAGGGGATGAATACAGCAGGTCCCTTAATGCTTTGAGTGTTATTTCGGCAAATGGAATTCCGGCCTTAGTAAAATATTTAGAGAGGATGGAGATAAGGAGGTCTGTTGTTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAAGTTGCAAGAGCTTGATAGCAAGTAGAATCGAATTGTCTCCTGTTCTTGAATTATTTCATGGTGGAAATGATAGTGTGAGAGGCATCTGCGCCGAATTTCTCTCAGAGCTTGTTCAATTGAATAGGAGAACTTTCTGCAACGAAGTCTTGCAGATAATCAAGGATGAAGGAGCATTTAGTACGATGCATACATTTCTTGTATATCTTCAGATGGCTCCAATGGAGCATCAGATTGCTGTTGCCAGCCTTCTTCTTCAGCTTGATCTTCTGGTGGAGCCGCGAAAGATGAGCATTTATAGGGAAGAAGCTGTAGAGACACTCATTGAAGCACTTTGGCAAAAAGACTTCTCAAATACTCAAATTAAGGCTTTAGATGCTTTACTATATCTTATTGGGCATGTCACTTCCTCAGGAAATTCATATACTCAAGCCTGGTTGCTCAAGATCGCAGGATTCGATCAGCCTTACAATGCTTTAATGAAGGCCGAGCAGTTGGGACAACGTGACATTGATTTGGTGGAAACAATGGAGGATGAGAAAAATGCCTTGAACTCTTGGCAGCAAAGAGTTGCATTTGTACTTTGCAACCATGAAAATGGTTCAATATTTAAAGCTTTGGAAGAATCCTTAAGGAGTACTTCACTAGAGATGGCGAAATCTTGCCTTGTTCTGGCCACATGGCTTACACACATGCTCTCTACGCTTCCTGACACCGGCATAAGAGACGTTGCTCGCAAGTCATTGCTTGGCGAATTCATAAATGTTCTACTATCATCAAAGAACATGGAGGAAAAAATTCTTGCTACCCTAGCTTTGAATACTTTCATTGGTGATCCAATTGCTCATGAAGCACTTGGAGCCTATGCTAAAAGCATTTATAGAACCTTGAGGAAGCTAAAGAAACATTCAGCTGCAGCAGTTGATATTATGAGAACCATACTAAACTTAAAATCTGTTGATGTGACTGAGTTGTGGAGTTGTAAAGAGGTTGTTGAGTTAGATTTGAGCTCAAATGGAGAAGTGCTTTCTTTGCTTTATCTGAATGGACAGGTCTTGAGTGGACACTCTGATGGAACTATCAAGGTATGGGATGCAAGGAAGAGAATACCAAGAATCATTCAAGAAACTCGTGAGCACACAAAAGCTGTAACTTCTCTGTGTTCTTCCGGTGACAGACTCTACAGTGGTTCCTTAGACAAAACCATCAGGATTTGGACAATCAAACCCAATGAGATTATATGTATAGATGTTCATGATGTGAAGGAGGCAGTGTATGAGTTAACAGCAAATGCTAGATTGGCATGCTATGTGTCTCAAGGAACTGGAGCCAAGGTTTATAATTGGTCAGAGGCTCCAAAGCATATCAATTTCAGCAAGTATGTGAAGTGCCTTGCTGTTGCCGGCGACAAATTGTATTGCGGCTGCTCCGGTTACAGCATTCAGGAGGTTGACTTGTTCAGACAGACATCATATCCATTCTTCTCTGGATCACTATCAACTGGACTCGACATCCATCGGGTAGCCATCAACAATGACTTCATATTTGCAGGTACGAAGTTTGGCACCATTGAGGTTTGGCTGAAAGATAAGTTCACCCGGGTTGCTTCCATCAAAATGGCTGGCGGTAACACAAAAATCACATCATTAGTATCAGATGCAGATGGTATGATGCTTTTTGTTGGTTCCTCTGATGGAAAGATCCAGGTTTGGGCCTTGGATTAA 4230 0.4118 MAGNFRFPMDQKDILRFLTTTTDSFIQDRLIDKELRAQHKEQCAERLAAEDGSSEKDTEVEYSDQAVLANLDWGIEALEEAINTYNTETKLARLDYAEKMLQVCAMLNPKQKTAGVPNFYLSAWAHLNLSYLWKLRNNIQNCVLHAIDMFIIDPFFARIDFAPELWKTLFLPHMSSIVGWYSEERHKLMMEVIPETSDFSVTADFDQLFNESLVFSMRPNQLDKLQKLEQLYGESLDENTRLYAKYYKDCLNSDATTSSKKVAPMMPIAEPPMTPLHELSRSVPDYVKFGPILPKSAGFSLMSAPKDDVNEKTRDNPSSHSKVESSSMWGTKESIIEENENENEDDDSDSELDDASMDSANKSNIFSPERKAIKDENIEPKVHLSNQRNKIYSPSVSSPLDSPRTPQDNSSTNPHMRSKREPKYLRLLSSRLRDSIISDSLTSSPDLSNDHILNSDHEMMAMKNIKKKDYNRMPCMSHENEDSLVLNDSSFCESEEGYHGCISLPKLEKQTTGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLKTGNTTCPITRQPLSASMLPKTNYVLKRLITSWKEQHPELAQEFSNSNTNTPRGSSCSPLGKDTSMLSISQKTPDSTTHKNKEDYIIQRSKRFMQVASTSPTSVLSQAAVETILNSMKPYISSLCTSENLQECEEAVLEIARSWKDAKSDPQIHSYLSKPTVINDSDFDCLAALLKNGLAEAALLIYLLRPVFAQLSAHELIPSLIQVIQNKNEKLDDYQLVMDPRDAAVAILEQILVGGDEYSRSLNALSVISANGIPALVKYLERMEIRRSVVSILLCCMQAEKSCKSLIASRIELSPVLELFHGGNDSVRGICAEFLSELVQLNRRTFCNEVLQIIKDEGAFSTMHTFLVYLQMAPMEHQIAVASLLLQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNTQIKALDALLYLIGHVTSSGNSYTQAWLLKIAGFDQPYNALMKAEQLGQRDIDLVETMEDEKNALNSWQQRVAFVLCNHENGSIFKALEESLRSTSLEMAKSCLVLATWLTHMLSTLPDTGIRDVARKSLLGEFINVLLSSKNMEEKILATLALNTFIGDPIAHEALGAYAKSIYRTLRKLKKHSAAAVDIMRTILNLKSVDVTELWSCKEVVELDLSSNGEVLSLLYLNGQVLSGHSDGTIKVWDARKRIPRIIQETREHTKAVTSLCSSGDRLYSGSLDKTIRIWTIKPNEIICIDVHDVKEAVYELTANARLACYVSQGTGAKVYNWSEAPKHINFSKYVKCLAVAGDKLYCGCSGYSIQEVDLFRQTSYPFFSGSLSTGLDIHRVAINNDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGNTKITSLVSDADGMMLFVGSSDGKIQVWALD 1409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60771g00006 1409 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 715 1333 - -
Stsc60771g00006 1409 SUPERFAMILY ARM repeat 747 1113 IPR016024 -
Stsc60771g00006 1409 MobiDBLite consensus disorder prediction 384 413 - -
Stsc60771g00006 1409 Pfam WD domain, G-beta repeat 1211 1241 IPR001680 GO:0005515
Stsc60771g00006 1409 Pfam WD domain, G-beta repeat 1184 1200 IPR001680 GO:0005515
Stsc60771g00006 1409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1375 1409 - -
Stsc60771g00006 1409 MobiDBLite consensus disorder prediction 320 334 - -
Stsc60771g00006 1409 ProSiteProfiles Trp-Asp (WD) repeats profile. 1212 1251 IPR001680 GO:0005515
Stsc60771g00006 1409 SMART WD40_4 1205 1242 IPR001680 GO:0005515
Stsc60771g00006 1409 SMART WD40_4 1162 1200 IPR001680 GO:0005515
Stsc60771g00006 1409 SMART WD40_4 1366 1407 IPR001680 GO:0005515
Stsc60771g00006 1409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 505 600 IPR013083 -
Stsc60771g00006 1409 Gene3D - 1134 1409 IPR015943 GO:0005515
Stsc60771g00006 1409 MobiDBLite consensus disorder prediction 338 354 - -
Stsc60771g00006 1409 SMART Ubox_2 519 583 IPR003613 GO:0004842|GO:0016567
Stsc60771g00006 1409 MobiDBLite consensus disorder prediction 368 383 - -
Stsc60771g00006 1409 Gene3D - 726 1000 IPR011989 -
Stsc60771g00006 1409 MobiDBLite consensus disorder prediction 590 625 - -
Stsc60771g00006 1409 CDD RING-Ubox_PUB 517 569 IPR045210 -
Stsc60771g00006 1409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1212 1244 - -
Stsc60771g00006 1409 MobiDBLite consensus disorder prediction 300 422 - -
Stsc60771g00006 1409 ProSiteProfiles Trp-Asp (WD) repeats profile. 1187 1200 IPR001680 GO:0005515
Stsc60771g00006 1409 ProSiteProfiles Trp-Asp (WD) repeats profile. 1375 1409 IPR001680 GO:0005515
Stsc60771g00006 1409 SUPERFAMILY RING/U-box 514 588 - -
Stsc60771g00006 1409 MobiDBLite consensus disorder prediction 590 631 - -
Stsc60771g00006 1409 Pfam U-box domain 517 587 IPR003613 GO:0004842|GO:0016567
Stsc60771g00006 1409 ProSiteProfiles U-box domain profile. 515 590 IPR003613 GO:0004842|GO:0016567
Stsc60771g00006 1409 SUPERFAMILY WD40 repeat-like 1159 1408 IPR036322 GO:0005515
Stsc60771g00006 1409 PRINTS G protein beta WD-40 repeat signature 1229 1243 IPR020472 -
Stsc60771g00006 1409 PRINTS G protein beta WD-40 repeat signature 1187 1201 IPR020472 -
Stsc60771g00006 1409 PRINTS G protein beta WD-40 repeat signature 1394 1408 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60771g00006 Stsc-Chr60771 36246 42743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60771g00006 517 632 U-box Gene Family AT3G54850 41.525 1.48e-16 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60771g00006 - - gmx:100776142 2221.05