Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60764g00004 ATGGGGAAGAAAAAGGGAAGCTGGTTTTCTTCCGTGAAGAAAGTTTTCAAGTCAAACCCTAAGGACTCCAACTCACCCCTTCAACACAACAAGAAGGAGAATGAAGAGAAGTGGCAGCATGAAGCACCAGAGGTTGTGTCTTTTGAGCATTTTCCTGCAGAGAGTTCTCCTGATGCAACCAATGAGGGTAGCACCACATCAACTCCAGTGGCTGAAGACAGAAATCATGCCATTGCCTTTGCTGCTGCGACTGCCGCAGCTGCCGAAGCTGCCGTGGTGGCTGCTCAGGCAGCCGCTAGGGTTGTGAGAATGGCAGGTTATGGACGCCACTCCAAGGAGGAAAGGGCTGCAGTACTCATTCAATCATACTACAGAGGATACCTTGCTCGACGTGCACTGCGAGCTTTGAAGGGATTGGTGAGGCTGCAAGCACTTGTGAGGGGACATAATGTGCGCAAGCAAGCGCAGATGACAATGCGGTGCATGCAAGCATTGGTTCGAGTTCAGGCAAGAGTAAGGGCTCGCAGAATCCAGTTAACTCAGGAGAAGCAGGAGGAGAGACAGCAATTTGACCACCAACAGAAACCACCACCTAAGCCTGTTATAAGCCCTGTGACAAAGTTAGACACAGATAACTCTTGGGACAATAGGCGCCAAAGTAGGCAGAAAATTAAGGACAATGACTTGAGGAAACATGAAGCTACAATGAAGAGGGAAAGAGCTCTTGCTTACGCCTTCAACTACCAGCAACAGAAGCATTATTTGCATATGGACCCAAATGGTGATGAAATTGGAATCTATCCCTATGGTGCAAATGAGAGTGAGAAAGCACAATTGGATTGGAACTGGTTGGAACGTTGGATGTCATCACAACATGTTAGGCCACGTGACAACACATACATGACTCTTGCTACAACGGCCACTACAACTACCGATGACATGTCCGAAGAGAAAACGGTTGAGATGGACATGGTTGGGCCTTCTGATCCAATTCACGAAAATATGGGCCTAATGGGCCATGACCACCTTGATTCAAGCCCAATTTCAAAGATGCAACGCCAGAGACAGCACAGTGGAGGGGGAAGTGTGCCTAGCTACATGGCCCCAACACAGTCTGCAAAGGCCAAGGTTAGGGGTCAGAGCCAACTTAAGCAACGGGCTTCACCTGGGCCCAATTGGAACACTTCAACAAGGAGAAACTCTTCTGTTGGGTTGGGCTTTGACTCATCTAGCTCTGGTGAGCCCACTGCAATGTACCCGTTTCCAAGGTGCCCAAGCCCAAAGATTAATGGGGTGAGGCTCCAATCTAGACGAATTTCCGGCGGGAGCCCAGATCATGTAAGTGGGGAAGATTGGGCTCTTCCCCTGGGAGCCCATGGTTGGACATGA 1389 0.4953 MGKKKGSWFSSVKKVFKSNPKDSNSPLQHNKKENEEKWQHEAPEVVSFEHFPAESSPDATNEGSTTSTPVAEDRNHAIAFAAATAAAAEAAVVAAQAAARVVRMAGYGRHSKEERAAVLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRIQLTQEKQEERQQFDHQQKPPPKPVISPVTKLDTDNSWDNRRQSRQKIKDNDLRKHEATMKRERALAYAFNYQQQKHYLHMDPNGDEIGIYPYGANESEKAQLDWNWLERWMSSQHVRPRDNTYMTLATTATTTTDDMSEEKTVEMDMVGPSDPIHENMGLMGHDHLDSSPISKMQRQRQHSGGGSVPSYMAPTQSAKAKVRGQSQLKQRASPGPNWNTSTRRNSSVGLGFDSSSSGEPTAMYPFPRCPSPKINGVRLQSRRISGGSPDHVSGEDWALPLGAHGWT 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60764g00004 462 PANTHER IQ-DOMAIN 5-RELATED 1 404 - -
Stsc60764g00004 462 MobiDBLite consensus disorder prediction 1 69 - -
Stsc60764g00004 462 MobiDBLite consensus disorder prediction 349 416 - -
Stsc60764g00004 462 MobiDBLite consensus disorder prediction 349 462 - -
Stsc60764g00004 462 Pfam IQ calmodulin-binding motif 114 134 IPR000048 GO:0005515
Stsc60764g00004 462 Pfam IQ calmodulin-binding motif 140 155 IPR000048 GO:0005515
Stsc60764g00004 462 Gene3D - 111 161 - -
Stsc60764g00004 462 MobiDBLite consensus disorder prediction 182 221 - -
Stsc60764g00004 462 MobiDBLite consensus disorder prediction 26 44 - -
Stsc60764g00004 462 ProSiteProfiles IQ motif profile. 113 141 IPR000048 GO:0005515
Stsc60764g00004 462 ProSiteProfiles IQ motif profile. 137 164 IPR000048 GO:0005515
Stsc60764g00004 462 Pfam Protein of unknown function (DUF4005) 346 402 IPR025064 -
Stsc60764g00004 462 Coils Coil 169 189 - -
Stsc60764g00004 462 SMART iq_5 112 134 IPR000048 GO:0005515
Stsc60764g00004 462 SMART iq_5 135 156 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60764g00004 Stsc-Chr60764 20595 24248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60764g00004 1 428 IQD Protein Family AT3G49260 48.253 5.70e-93 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60764g00004 - - aprc:113873497 558.91