LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60761g00004	ATGCCTTCATGGTGGAATTTTTCATCATCAAAAGATACCAAGAAGAAAGCAGGTAAGGAAAGTTTTATCGACTCGTTACAACGGAAATTTAAATCCCCATCTGAAGGTAAACTAGACTCTAGATCTGGAGGATCTCGTAGACATTGTGATGACTCGATCTCTGAGAAGGGAGCTCAGTCTCCTGTTGAATCAAGATCTTCCTCACCTTCAAAAGTCGCGAGATGTCAAAGTTTTGCTGAAAGGCCTCTTTCTCAGCCACTGCCACTTCCTAGCCTGCATGCATCAAATGCAACTCGGGGGGCAGATTCTGAAATTAACATATTATCAAAATCAAGAACGGAAAAGGGGTCGAAGCCATCATTGTTTCTGCCACTACCAAAACCCGCATGCATGCGTCGTAGGATGAACCTTGCAGATTTGGATGGAGATATGGGGCCAGCTTCAGTCTCTAGTGAGAGCTCTGCTGATAGTGATGAACCAACAGACTCGCGAAGTCGTAGCCCACTAGCAACCGACTCTGAGGCTGGGACTAGAACAGCTGCAGGCAGTCCTTCCAGCCTGATGCTCAAGGATCAATCTACTGTTTGCCAATTAAATTCAAGAGAAGCTAAAACACCAGCAAATATTCTTAGTAATCATATGACTTCTACTTCACCAAAACGGAGGCCATTAAGCAACCATGTTCCAAATCTGCAGATTCCTCCTCACGGTGCCTTCTGCAGTGCTCCCGACAGCTCCAGGTCAAGTCCATCTAGAAGTCCATTGAGAGCATTTGCCACTGAACAGGTGTTGAACTCTGCTTTTTGGGCTGGAAAGACATATTCAGATGTCAATTTCCTTGGATCGGGTCACTGCTCCAGTCCAGGTTCTGGTCAAAATTCTGGCCATAATTCAATGGGAGGGGACATGTCAGGACAGTTATTTTGGCAACCAAGCAGGGGTAGCCCTGAGTATTCACCTGTACCCAGTCCTAGAATGACTAGTCCAGGTCCAAGTTCACGAGTTCAGAGTGGAGCCGTCACACCTATTCATCCCAGAGCTGGGGGAACACTCACTGAATCGCAGTCTGGATGGGCTGATGATGGAAAACAACAGAGTCATCGTTTGCCCCTTCCTCCGTTATCAGTTACCAATTCCTCTCCTTTCTCTCATTCAAATTCTACTGCAACATCTCCATCTCTGCCTAGAAGTCCTGGAAGAGCAGATAATCCAGTTAGCCCAGGCTCACGTTGGAAAAAAGGGAAGCTAATAGGCAGAGGCACCTTTGGACATGTCTATGTTGGCTTCAATAAGGAAAGTGGTGAAATGTGTGCAATGAAAGAGGTGACTCTATTTTCAGATGATGCCAAGTCTAAAGAAAGTGCGAAGCAATTAATGCAGGAAATCAATCTACTAAGCCGTTTACGGCATCCAAATATCGTGCAGTATTACGGTTCTGAAACAGTAGGTGACAAGCTTTACATATATCTGGAGTATGTATCAGGAGGCTCCATATATAAGCTTCTTCAAGAGTATGGGCAATTCGGTGAACTAGCTATTCGTAGTTATACTCAACAAATTTTATCGGGGCTTGCTTATTTACATGCTACAAACACTGTTCACAGGGACATAAAAGGAGCAAATATATTGGTTGATCCTAATGGTCGGGTTAAGTTGGCAGACTTTGGCATGGCAAAGCATATAACAGGGCAATCGTGTCCATTATCATTCAAGGGAAGCCCTTATTGGATGGCACCTGAGGTTATAAAGAATGCTAAAGGTTACAACCTTGCAGTGGATATATGGAGTCTTGGATGCACCGTTTTGGAAATGGCTACGACTAAGCCTCCCTGGAGTCAATATGAAGGGGTTGCTGCCATGTTTAAGATTGGTAATAGCAAGGAACTCCCTACCATCCCTGATAATCTTTCGAGTGAAGGAAAGGATTTTGTCATCAAATGTCTTCAACGGAATCCTCACAATCGCCCTTCAGCCCGTGAATTATTGGACCATCCTTTTGTAAAATGTGCTGCGCCTTTGGAAAGACCTATTCTCGGCTCTCCAGCTTCAGAGCTTGATTCTGGGATTGTACAAGGAACAAAATCTCTGGGTATTGGTCAAGGAAGGAATCTCTCTACCTTGGATTCAGATAGACTTTCTGTTAATTCTTCTAGGGTTCTGAAAAATATTTCTCAAGCAAGTGACATCCATATTCCAAGAAATATATCTTGCCCTGTCTCTCCCATTGGAAGCCCACTTTTGAGGTCAAGGTCCCCACAGCCCATAAATGGAAGAATATCTCCCTCTCCTATATCTAGCCCTCGGACTGCTTCCGGTGCATCGACCCCTCTTCATGGGTGTAGCGGTGCCCTTCCAGTTAGTAATCACTTAGTTTACTTTCAAGAGGGTCTTGGAAACTTGCCAAAGTCCTCAAATATTGACATTTTTCGAGGAATGCAAATGACATCACGCATTGCATCTGAATTGGTTCCCACTGAAAATGATGTTCAATCAGTCTTGGCAGCACGTGTTAGTCGGCAGCTGCTGGGGGATAATGTGAAGATGAACCCATGCTTTGATCTTAGTCCCAACTCCTCGGTGATCGGCCGGCCAAATGGTTTATGA	2604	0.4478	MPSWWNFSSSKDTKKKAGKESFIDSLQRKFKSPSEGKLDSRSGGSRRHCDDSISEKGAQSPVESRSSSPSKVARCQSFAERPLSQPLPLPSLHASNATRGADSEINILSKSRTEKGSKPSLFLPLPKPACMRRRMNLADLDGDMGPASVSSESSADSDEPTDSRSRSPLATDSEAGTRTAAGSPSSLMLKDQSTVCQLNSREAKTPANILSNHMTSTSPKRRPLSNHVPNLQIPPHGAFCSAPDSSRSSPSRSPLRAFATEQVLNSAFWAGKTYSDVNFLGSGHCSSPGSGQNSGHNSMGGDMSGQLFWQPSRGSPEYSPVPSPRMTSPGPSSRVQSGAVTPIHPRAGGTLTESQSGWADDGKQQSHRLPLPPLSVTNSSPFSHSNSTATSPSLPRSPGRADNPVSPGSRWKKGKLIGRGTFGHVYVGFNKESGEMCAMKEVTLFSDDAKSKESAKQLMQEINLLSRLRHPNIVQYYGSETVGDKLYIYLEYVSGGSIYKLLQEYGQFGELAIRSYTQQILSGLAYLHATNTVHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNAKGYNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPTIPDNLSSEGKDFVIKCLQRNPHNRPSARELLDHPFVKCAAPLERPILGSPASELDSGIVQGTKSLGIGQGRNLSTLDSDRLSVNSSRVLKNISQASDIHIPRNISCPVSPIGSPLLRSRSPQPINGRISPSPISSPRTASGASTPLHGCSGALPVSNHLVYFQEGLGNLPKSSNIDIFRGMQMTSRIASELVPTENDVQSVLAARVSRQLLGDNVKMNPCFDLSPNSSVIGRPNGL	867

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60761g00004	867	SUPERFAMILY	Protein kinase-like (PK-like)	409	739	IPR011009	-
	Stsc60761g00004	867	MobiDBLite	consensus disorder prediction	286	413	-	-
	Stsc60761g00004	867	CDD	STKc_MEKK1_plant	410	667	-	-
	Stsc60761g00004	867	Gene3D	Transferase(Phosphotransferase) domain 1	409	679	-	-
	Stsc60761g00004	867	MobiDBLite	consensus disorder prediction	348	362	-	-
	Stsc60761g00004	867	MobiDBLite	consensus disorder prediction	286	313	-	-
	Stsc60761g00004	867	FunFam	Mitogen-activated protein kinase kinase kinase	409	691	-	-
	Stsc60761g00004	867	MobiDBLite	consensus disorder prediction	746	776	-	-
	Stsc60761g00004	867	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	59	680	-	-
	Stsc60761g00004	867	MobiDBLite	consensus disorder prediction	1	227	-	-
	Stsc60761g00004	867	MobiDBLite	consensus disorder prediction	166	225	-	-
	Stsc60761g00004	867	MobiDBLite	consensus disorder prediction	12	54	-	-
	Stsc60761g00004	867	MobiDBLite	consensus disorder prediction	370	397	-	-
	Stsc60761g00004	867	SMART	serkin_6	411	667	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60761g00004	867	ProSitePatterns	Protein kinases ATP-binding region signature.	417	440	IPR017441	GO:0005524
	Stsc60761g00004	867	MobiDBLite	consensus disorder prediction	89	116	-	-
	Stsc60761g00004	867	MobiDBLite	consensus disorder prediction	57	74	-	-
	Stsc60761g00004	867	ProSiteProfiles	Protein kinase domain profile.	411	667	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60761g00004	867	Pfam	Protein kinase domain	412	667	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60761g00004	Stsc-Chr60761	12771	17379	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60761g00004	1	865	MAP Kinase Kinase Kinase	AT1G63700	58.659	0.0	875

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Stsc60761g00004		Pkinase	1.9e-73	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60761g00004	K20717		-	gmx:100792783	1378.23