Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60755g00010 ATGAACACTATGCTGGCTTCGTTCCCTTTATACCCAAGAACCTTTGCAAGCGTTAGAGCTGAATTGGACACACACACAGAGCAATCTTCTTTTCTCAAGTTGGCACCCAATCCATATCCTCTTGCAAGCAAAATCCTTGTTAAGAATTTGCCATATACTACTGGTGAGACTACTTTGCAAAAGGAATTTTCGAATTTTGGCAAGATAGCTGAAATTAAGGTTGCTAAAGATGTAAAAACAAAAAGATCTAAAGGATATGCTTTTATTCAATACACCTGTCAAGACGACGCCATGCTTGCGATAGAAACAATGGATCAGAAGGATTTTTATGGTAGGACGATTCATTTAGAAATCGCAAAGCCTGGCTGGGATGATTATGGTTCACAGCCAAGGACCTCAGGGCCCCCAAAGAAATGGACTTCGCCGGAGCCAGAGCAAGAGGAAGTGGTAGATTGCTGGTACTGA 465 0.4194 MNTMLASFPLYPRTFASVRAELDTHTEQSSFLKLAPNPYPLASKILVKNLPYTTGETTLQKEFSNFGKIAEIKVAKDVKTKRSKGYAFIQYTCQDDAMLAIETMDQKDFYGRTIHLEIAKPGWDDYGSQPRTSGPPKKWTSPEPEQEEVVDCWY 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60755g00010 154 Gene3D - 20 146 IPR012677 -
Stsc60755g00010 154 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 121 IPR000504 GO:0003723
Stsc60755g00010 154 SUPERFAMILY RNA-binding domain, RBD 42 135 IPR035979 GO:0003676
Stsc60755g00010 154 MobiDBLite consensus disorder prediction 125 154 - -
Stsc60755g00010 154 SMART rrm1_1 44 117 IPR000504 GO:0003723
Stsc60755g00010 154 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 115 IPR000504 GO:0003723
Stsc60755g00010 154 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 40 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60755g00010 Stsc-Chr60755 30644 32567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60755g00010 43 116 Eukaryotic Initiation Factors Gene Family AT4G34110 27.027 1.22e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60755g00010 - - gmx:100305971 207.608