Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60755g00005 ATGGCTTCCTTCACTATTGGTCCTCATCATCGCCATTTCTCACATGACTCTGATGAGGTTCGTCCTCCTACTCGGCAATCTGCCTCATCAAAAGTGCTATGCAGAGTTTGCAGTGATGAGATTGGATATAAGGAAGATGGAGGGCTATTTGTGGCATGTCATGTGTGTGCCTTCCCTGTTTGTCGACCCTGCTATGAGTATGAGAGAAGTGAAGGCACACAGTGCTGCCCTCAGTGCAATACTCGCTATAAGCGTCACAAAGGGTCTCCTAGAGTTGTTGGAGATGAAGAGGACAACTTTGATGCAGATGATTTTGATGATGAATTTCAGATTAAGACTGGCCATGATCATGAAGAAATTAACCACACGGAAGATAAAGACAAGAAGGAACAGCAATGGCATCCCAATGCTCAAGCTTTTTCTTCAGCCGGAAGTGTTATCGGAAAGGACTTTGAAGGGGAGAAAGAATCCTACAGCAATGCAGAGTGGGAAGAGAGAGTAGAGAAATGGAAAGCCAGACAAGAAAAGAAAGGCCTCTTGAACAAAGAAGAAGGAAAAGACAATCAAGCTGAAGAAGAAGATGATGATTACCTTTTGGCTGAAGCTAGACAACCATTGTGGCGAAAAGTGCCAATTTCTTCAAGCCTAATCAATCCATACCGAATAGTGATTGTGATGAGGCTGATAATCCTGGCTTTCTTCTTGCGCTTTCGCATCATGACTCCAGCACATGATGCATTCGCACTGTGGTTAACATCTGTGATATGTGAGATATGGTTTGCACTCTCATGGATCCTTGATCAGTTCCCTAAATGGTTCCCCATCACGCGCGAGACTTACTTGGACCGCTTGTCCATAAGGTTCGAGCGAGAAGGGGAACCAAACAAGCTTTCCCCTGTGGATGTCTTTGTGAGTACTGTGGACCCTTTGAAGGAACCTCCAATCATAACAGCCAACACTGTCCTTTCCATCCTCTCGGTTGATTACCCGGTCGATAAGGTTTGCTGCTATGTATCAGATGATGGTGCTTCTATGCTTCTCTTTGATACACTCTCTGAAACCTCTGAGTTTGCAAGAAGATGGGTTCCCTTTTGCAAGAAGTATAACATTGAGCCAAGGGCTCCTGAGTACTATTTCTCTCAGAAAATCGATTACTTGAAAGACAAGGTACATCCGATGTTTGTCAAGGAACGCAGGGCCATGAAGAGAGAATATGAAGAATTTAAAGTGAAGATTAATGCTTTGGTGGCAAAGGCTCAGAAGAAACCAGAGGAAGGTTGGGTGATGCAGGATGGAACACCATGGCCTGGGAATAACACTCGTGATCATCCAGGAATGATTCAGGTGTACTTGGGAAGTGCTGGTGCACTTGACGTGGAAGGCAAGGAACTGCCGCGACTCGTGTATATTTCGCGTGAAAAACGTCCTGGTTATCAACACCACAAAAAGGCTGGTGCCATGAATGCATTGGTTCGAGTTTCCGCTGTGCTTACAAATGCACCTTTCATGTTGAATCTGGATTGTGATCACTACATCAACAATAGCAAGGCTATAAGAGAAGCTATGTGCTTCTTAATGGATCCTCAGCTTGGGAAGAAGCTCTGCTATGTCCAATTCCCACAAAGGTTCGATGGTATCGACCGACACGATAGATATGCCAATCGCAACATTGTATTCTTTGATATCAACATGAAAGGCCTAGATGGGATTCAAGGTCCTGTGTATGTTGGTACTGGAACAGTTTTCAATAGGCAGGCATTGTACGGATATGATCCACCAGTGTCCGAGAAAAGGCCAAAGATGACATGTGACTGTTGGCCTTCTTGGTGCTGCTGCTGTTGTGGTGGTTCAAGGAAATCAAAGTCAAAGAAGAAATCAGGTGGAGGAGGCACCAATTCTCAAAATCTTATAAAGGAGGCTATTCATGTTATAAGCTGTGGCTATGAAGAAAAGACTGAATGGGGAAAAGAGATTGGGTGGATTTATGGCTCAGTGACAGAAGACATCTTAACAGGATTCAAAATGCACTGTAGAGGGTGGAAATCAGTGTACTGCATGCCAAAGAGACCAGCTTTCAAGGGATCTGCACCAATAAATCTATCAGATAGGTTGCACCAAGTTCTGAGATGGGCTCTTGGTTCTGTTGAAATTTGCCTTAGTCGCCATTGTCCACTGTGGTATGGCTATGGAGGAAAGCTTAAGTGGCTAGAGAGGATGGCTTATACTAACACCATAGTATATCCATTCACTTCCATTCCTCTCCTTGCATATTGCATACTACCAGCTGTGTGTCTTCTAACTGGAAAATTCATCATTCCCACTTTGACAAACCTTGCTAGTGTATGGTTCATGGCTCTATTCATATCCATCATCTTAACCGGCGTCCTAGAGCTTCGATGGAGCGGAGTTAGCATCGAAGACTGGTGGCGAAACGAGCAATTTTGGGTGATTGGAGGAGTTTCAGCACATCTTTTTGCTGTGTTTCAAGGCCTCCTGAAAGTTCTTGGAGGAGTAGACACCAACTTCACAGTTACAGCAAAAGCAGCAGATGATACTGAGTTTGGAGAGCTATACCTTTTCAAGTGGACAACACTTCTGATCCCACCAACCACCCTCATAATCTTGAACATGGTTGGGGTTGTGGCAGGTGTATCTGATGCCATTAACAATGGATATGGCACATGGGGACCTTTATTTGGGAAGCTATTCTTTGCATTTTGGGTTATTGTTCACTTATATCCCTTCCTAAAGGGTCTCATGGGAAAGCAAAACAGAACTCCAACCATTGTGGTGCTGTGGTCAATTCTGCTAGCATCTATTTTCTCATTGATTTGGGTGAGGATCGATCCATTCTTGCCTAAGCAAACTGGTCCAATACTCAAACAGTGTGGAGTTGATTGCTAA 2904 0.4421 MASFTIGPHHRHFSHDSDEVRPPTRQSASSKVLCRVCSDEIGYKEDGGLFVACHVCAFPVCRPCYEYERSEGTQCCPQCNTRYKRHKGSPRVVGDEEDNFDADDFDDEFQIKTGHDHEEINHTEDKDKKEQQWHPNAQAFSSAGSVIGKDFEGEKESYSNAEWEERVEKWKARQEKKGLLNKEEGKDNQAEEEDDDYLLAEARQPLWRKVPISSSLINPYRIVIVMRLIILAFFLRFRIMTPAHDAFALWLTSVICEIWFALSWILDQFPKWFPITRETYLDRLSIRFEREGEPNKLSPVDVFVSTVDPLKEPPIITANTVLSILSVDYPVDKVCCYVSDDGASMLLFDTLSETSEFARRWVPFCKKYNIEPRAPEYYFSQKIDYLKDKVHPMFVKERRAMKREYEEFKVKINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPRLVYISREKRPGYQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAIREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKSGGGGTNSQNLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEICLSRHCPLWYGYGGKLKWLERMAYTNTIVYPFTSIPLLAYCILPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVSIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGTWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPILKQCGVDC 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60755g00005 967 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 203 934 - -
Stsc60755g00005 967 SUPERFAMILY RING/U-box 27 100 - -
Stsc60755g00005 967 SUPERFAMILY Nucleotide-diphospho-sugar transferases 313 757 IPR029044 -
Stsc60755g00005 967 FunFam Cellulose synthase 417 591 - -
Stsc60755g00005 967 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 406 592 IPR029044 -
Stsc60755g00005 967 Pfam Cellulose synthase 300 625 IPR005150 GO:0016020|GO:0016760|GO:0030244
Stsc60755g00005 967 Pfam Cellulose synthase 631 959 IPR005150 GO:0016020|GO:0016760|GO:0030244
Stsc60755g00005 967 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 108 IPR013083 -
Stsc60755g00005 967 Pfam Zinc-binding RING-finger 29 99 IPR027934 -
Stsc60755g00005 967 FunFam Cellulose synthase 15 108 - -
Stsc60755g00005 967 Coils Coil 398 418 - -
Stsc60755g00005 967 CDD mRING-HC-C4C4_CesA 34 82 - -
Stsc60755g00005 967 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60755g00005 Stsc-Chr60755 10379 14477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60755g00005 2 967 Cell Wall Biosynthesis AT5G17420 65.742 0.0 1380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60755g00005 K10999 - nnu:104603242 1388.24