Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60750g00008 ATGGGTGTATTAGCTGGTGTATTCACGGGAAGGTTTTTGGTGCCGTACACGATCGTCAAATTCATATTGGGTGTCATGTTTTTCTTTGCACTGTTGATTTACACATGTCTCAGAATGCATATATCAATCTATGAAAATATTGAAGATTTTCTGCGAGGAAACACCCTCATGCCAATAAGGTATCCATATAAAGAGATAAAGAAGATGACCAAAGGTTTTAAGGAAAAGCTTGGAGAAGGAGGATTTGGCTCTGTCTACAAAGGAAAACTAATAAGTGGGCCCTTCGTAGCCATAAAAATGTTGGGTAAAGCCAAAGGTAATGGCCAAGATTTCATCAGTGAAGTTGCTACCATTGGTAGAATACACCATGCCAATGTGGTAAGGCTGATTGGATTTTGTGTCGAGGGTTCAAAACGTGCTCTTATATATGAATTCATGCCGAATGGTTCTCTCGATAAATATATATTTTCCAAAGAAAGAAGCGTATTTCTAACTTCCAAGAAAATGTTTGAGATATCTTTGGGAGTGGCACGAGGTATGGCTTATTTGCATGAAGGCTGTGACATGCAAATTTTGCATTTTGATATCAAGCCTCACAACATCCTTCTTGATGAGAACTTCATTCCAAAAGTCTCAGACTTTGGTCTTGCAAAGCTATATCCTCTTGATAATAGTATCGTAAGTTTGACTGCGGCAAGAGGAACAATTGGTTACATGGCTCCAGAACTGTTCTATCAAAATATTGGAGCAGTATCTTACAAGGCCGATGTCTATAGCTTTGGAATGCTTCTGATGGAAATGGCGAGTCGAAGAAGAAATACGAATCCACATGCAGAGCATTCAAGCCAACTTTACTTTCCATTTTGGATTTATGAGCAATTGGGTGCTGCAGAGGAAAATAATGAGATAGAGATGGAAACTTTTAATCATGAAGAAAGGAGTGAGCTAGCAAGAAAGATGTTTGTGACTGCATTATGGTGTATACAATTGAAGCCAAGTGATCGTCCTTCAATGAATAAAGTAGTGGAAATGTTAGAAGGAGATGTCGCAAGCATTGAAATGCCTCCAAAGCCTTCGTTTTATCCAAATGATGTGATTCAAAGAGATGACTCACAAGTAAATGATTCAAGTAATTCTGATGTCTCTTCAAGTTTTGAGGAAGAAAATACAACCAACCCTTTGTTAAACTTTTCTGGTTGA 1200 0.3817 MGVLAGVFTGRFLVPYTIVKFILGVMFFFALLIYTCLRMHISIYENIEDFLRGNTLMPIRYPYKEIKKMTKGFKEKLGEGGFGSVYKGKLISGPFVAIKMLGKAKGNGQDFISEVATIGRIHHANVVRLIGFCVEGSKRALIYEFMPNGSLDKYIFSKERSVFLTSKKMFEISLGVARGMAYLHEGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPLDNSIVSLTAARGTIGYMAPELFYQNIGAVSYKADVYSFGMLLMEMASRRRNTNPHAEHSSQLYFPFWIYEQLGAAEENNEIEMETFNHEERSELARKMFVTALWCIQLKPSDRPSMNKVVEMLEGDVASIEMPPKPSFYPNDVIQRDDSQVNDSSNSDVSSSFEEENTTNPLLNFSG 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60750g00008 399 Pfam Protein tyrosine and serine/threonine kinase 73 345 IPR001245 GO:0004672|GO:0006468
Stsc60750g00008 399 Gene3D Phosphorylase Kinase; domain 1 49 145 - -
Stsc60750g00008 399 SMART serkin_6 71 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60750g00008 399 FunFam PR5-like receptor kinase 146 357 - -
Stsc60750g00008 399 Gene3D Transferase(Phosphotransferase) domain 1 146 354 - -
Stsc60750g00008 399 FunFam serine/threonine-protein kinase PBS1-like 43 145 - -
Stsc60750g00008 399 PANTHER RUST RESISTANCE KINASE LR10-RELATED 44 369 IPR045874 GO:0004672
Stsc60750g00008 399 ProSiteProfiles Protein kinase domain profile. 71 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60750g00008 399 MobiDBLite consensus disorder prediction 365 399 - -
Stsc60750g00008 399 MobiDBLite consensus disorder prediction 356 399 - -
Stsc60750g00008 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Stsc60750g00008 399 SUPERFAMILY Protein kinase-like (PK-like) 56 346 IPR011009 -
Stsc60750g00008 399 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60750g00008 Stsc-Chr60750 29412 30611 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60750g00008 56 358 Receptor kinase-like Gene Family AT1G66910 51.634 5.74e-107 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc60750g00008 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60750g00008 - - adu:110273082 620.157