Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60748g00006 ATGGCTGCAGCACTTGTTGTTGGTGCTTTAGTTAGTGGCTTCGCCAACGTTGTTCTTGACAGGCTCATTTCATTTGAGTTTGTCAACTTGGTGGTGGGCAAGAAGCTGAACAAGAAGTTAATTAACAGGCTGAGGACTGCTATCTTGGCTGCCAAGGCTCTGGCTGCTGACGCTGAGCAGAAGCAGTTTGGAGATGAACTTGTGAGGGAATGGCTTGATAGTCTCAGGGATGCACTCTACACTGCTGATGACTTGCTGGATCGTGTCTTCACCAAAGCTCAAATTCGCAGCAAGGTACGCCCTCGTCTTCCAGGCTGCCTTCATTTGTCTGATAGGAAGATGGTGACTAAGATAGAAGATGTGATTGAAAGAATTGAAGATCTTGAGAGACGCAAAGATATCCTTGGTCTCAGAGTGCTTCAAACGGGTAGCTCCTCATCATGGAGACCAACCCCGTCCACTTCTCTTGAAAAGGGGACTGTCTATGGCAGGGATGCTGACAAACAGGCATTAATGAAGATGCTAAATGACAACAATGATCATAAGTTGTCTGTCATCTCTATTGTTGGTTTGGGCGGGGTTGGTAAAACAACTTTAGCACAATGGCTGTACAACAATGAGGATTTGATGAAGGGTTTTGATCCAAAAGCATGGGTTTGTGTATCTGAAAATTTTGATGTCGTGGAGACGACGAAGAATGTTATAAAGGAGATCAGTTCAGGTGTTTGTAGTCTTGATGGCTTCAATTTACTTCAACAAGATTTGAAGGGAAAACTGTCACAAAAAAAGTTCTTCATTATTTTGGATGATGTGTGGAGTGAAGATGCTGACAAGTGGAATAGTTTTATTACTCCTTTTCAACATGGGAGAAATGGAAGCACTCTTCTTCTAACTACCCGCAACAAAAATGTTGGTCCGAGAGTCCAAAATTATTACTCTTACCCTCTTGAGGGGTTGTCAGATGATTATTGCTGGTCTATTTTTGCGGCCAATGCATCCTTTCCTGAATCAAATGGGTGCTCAGAACTGGAAGAAATAGGTAGAATGATTGTCAAGAGATGTGATGGCTTGCCGTTAGCTGCAGAAACACTTGGACGCTTGTTGCACTCGGAGCATCATGTTGAAGAATGGAAGAAAATTCTATCCAGTGACATTTGGGAACTTTCTATCACTGACAATCTTTTACCACCACCAAAGAAGGGAGAGACTCTAGAAGCAGTTGGTTACGAGTGTTTTGATGACTTGGCTTCAAGAATGTTTTTCAAGCAGGTCCAGGAGAATGATGAGAAGCATTTTGTGATGCATGATCTCATGCATGACTTGGCAACTTTTCTTGCTGGTAAATTTTATTGTAGATTATCAGAAGGTGAAAACGAAGAGATGAGGAGTCTAACTCGTCATTTGTCATGTGATCATCCAATCTCGGAAAAAACCTATTCTTCTAGTAAAATCGAATCTTTGAGGACATTCTTGAATACCGATCATGGTCCTTTATGGATCGAGAAAGAAAGCGCAAGAATATTGTCAAAGAATAAATACTTGAGAGTCTTATCCTCCGAAAAACTCAGTGAATTTCCTGGTTCAATAGTTAAGTTGATCCACCTGCATTATTTGGATGTCTCTAGAAGTGCTATTAAGACATTGCCAGAGTCATTGGGCAAGTTGTCTCATTTGCAAACATTAAAGCTAAGCTGGTGTTCAGAGCTGATGTCACGGCCCAAAATGAGCCATGACCGGCGCTAA 1743 0.4194 MAAALVVGALVSGFANVVLDRLISFEFVNLVVGKKLNKKLINRLRTAILAAKALAADAEQKQFGDELVREWLDSLRDALYTADDLLDRVFTKAQIRSKVRPRLPGCLHLSDRKMVTKIEDVIERIEDLERRKDILGLRVLQTGSSSSWRPTPSTSLEKGTVYGRDADKQALMKMLNDNNDHKLSVISIVGLGGVGKTTLAQWLYNNEDLMKGFDPKAWVCVSENFDVVETTKNVIKEISSGVCSLDGFNLLQQDLKGKLSQKKFFIILDDVWSEDADKWNSFITPFQHGRNGSTLLLTTRNKNVGPRVQNYYSYPLEGLSDDYCWSIFAANASFPESNGCSELEEIGRMIVKRCDGLPLAAETLGRLLHSEHHVEEWKKILSSDIWELSITDNLLPPPKKGETLEAVGYECFDDLASRMFFKQVQENDEKHFVMHDLMHDLATFLAGKFYCRLSEGENEEMRSLTRHLSCDHPISEKTYSSSKIESLRTFLNTDHGPLWIEKESARILSKNKYLRVLSSEKLSEFPGSIVKLIHLHYLDVSRSAIKTLPESLGKLSHLQTLKLSWCSELMSRPKMSHDRR 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60748g00006 580 Gene3D - 318 390 IPR042197 -
Stsc60748g00006 580 Gene3D - 16 134 - -
Stsc60748g00006 580 PRINTS Disease resistance protein signature 354 368 - -
Stsc60748g00006 580 PRINTS Disease resistance protein signature 258 272 - -
Stsc60748g00006 580 PRINTS Disease resistance protein signature 185 200 - -
Stsc60748g00006 580 PRINTS Disease resistance protein signature 553 569 - -
Stsc60748g00006 580 Coils Coil 41 61 - -
Stsc60748g00006 580 SUPERFAMILY L domain-like 433 569 - -
Stsc60748g00006 580 Pfam NB-ARC domain 165 382 IPR002182 GO:0043531
Stsc60748g00006 580 PANTHER DISEASE RESISTANCE PROTEIN RP 407 567 IPR044974 GO:0006952
Stsc60748g00006 580 Gene3D Ribonuclease Inhibitor 466 578 IPR032675 -
Stsc60748g00006 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 393 IPR027417 -
Stsc60748g00006 580 Coils Coil 118 138 - -
Stsc60748g00006 580 Pfam Rx N-terminal domain 38 97 IPR041118 -
Stsc60748g00006 580 FunFam Probable disease resistance protein At1g61300 146 311 - -
Stsc60748g00006 580 Gene3D - 152 312 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60748g00006 Stsc-Chr60748 29014 30894 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60748g00006 183 368 WRKY Transcription Factor Family AT5G45050 24.873 2.71e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60748g00006 - - aip:107622599 768.844