Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60747g00013 ATGGTGGACGAACACGGTGACTTCGCCGGCACAATTTGCTCCATTTGCTACGAAGATCTCAAACCAGTTTCCGAAGATCTTCAATCCATCTCCATTTGCGGCCACGTCTTCCACGAGCTCTGCTTGCAGCAATGGTTCGAGTACTGTTCGAGAGCGAAGAAGCACACTTGTCCCGTTTGCAAGCAGAGTTGCAGGGTCAGCGATGCTTGCAGGCTTTACTTCCAATCGGTAGGAGATGTGATCGAATCTGCTATGCCTCGGAAGCCGTTTGATTCCGAGGAAGATTCCGGAGTTTTGAGAAAGGAAGTGAAGAGGTTGGAAGTTAGGGTTTCGGGGCTTAGTTCGGAGTTGGAGAAGAAGGGGAAGGAAATTGAGCACCTCAACAAGGAGCTTGGTGCCTGCAAGGAGCAAGCAAAGATTGATAGAGCATTAAAAAATGAGGCCTTGAGTCAAAAAGTATCCATGGAAACCCAGCTTCGTATGAAGACAGAGGAGCTTGAGAAGTCAACTTTTGAGTGTTATTCATTACAAAAAAGAAATATCACTTTGGCCAAAGAAATTGCGGCATTTAAATTAGTCTCTGATCTTGACCTTAATGAAGAGGAAGTTTTGAAGTATGCGACTTTGGGAAATGGGTTTAATGATAAAGATACGATAGACACATTGAGCAAATCTATGGTTCGACGTAACAGGGATTACAAAGATCTGATAGCTAAACGCAATGAATTAGCGGCCAAGTGCAATCAGCTAGAAAAGGGCGAGGCTCGGTACAGTAAAAAGCTTGAGAAGGCTAAGGAGAAGATTCTTAAATTGAAGGCTAGGGTACAAGAACTAGAGACAGCTGCAGAAGTAAGAGAGAACCAGTATCTCAAGTCTTTGAAAGCTTCAAAGATGAGAAAGTGTACAAATAATCCTGAAAACAGCCTCAATTCTAACAATGATGTAATCTCGACCAGCAATACTCCATTACATGAGCAAACGAAACAAACTTCAACCAAATCTGTAAGGGATTCGACTGTGGACAACAGTACATCTCAACAATTTTCAAGGATAGCCAACTGCATCCCTACTGAAAGTAAAGCTGTAAATGTTAATGGAAATAAATCCACTCCAGCTCTTCATAAAGACAGGGATTTTATATCACTTGATGATGATGCTTCTGAATTTACTGAACCTTTGTCTGGATGGCCAAGACGTGACTACAATGATCACTACAGGGATGGTGCTGCTCTTAGCAAGCCTACTGTAGCAAAGTCAGATGCAGCATATGAAAAGAAGAAAGAAACAGCAGTTCAAGGAACATATAACCTGACTGATTCTTCAAGAATTGATATTGACGTTGAAATGGCTAACAATGATGTTGATTTGGATGATGACATAACATTTATTGATAATGTTCAACAAGTTCAACCCAAGGTTAACATTATAAAGGATTCGCCACCAATAATTGCGAATCCAGGGGACATTTGTTTTTCTGGTGGATTGCTTGGTCCTGATGGATCACATAGGTACTTGGGTAAATGGTGCAAGCGTGGACAAAACGGCGAATCGCAATCTGCAAAAGGAGGATTGATAGCTGTTGGGGCTGATGGTAGAGGTGGCAGAGTTAAAGTTCTAAGAACAGCAGGCCAAACCTTCAAGGATGAGAAGGAAAATGACAAGGAATCAAAAAGATTAAAGGTTGGACCTAAGACAAGTAATTTGAGACCCCAAGGATGTCTTCAGATAGAACACTTTTTTGCCAAGGTTAATCACTAG 1758 0.4181 MVDEHGDFAGTICSICYEDLKPVSEDLQSISICGHVFHELCLQQWFEYCSRAKKHTCPVCKQSCRVSDACRLYFQSVGDVIESAMPRKPFDSEEDSGVLRKEVKRLEVRVSGLSSELEKKGKEIEHLNKELGACKEQAKIDRALKNEALSQKVSMETQLRMKTEELEKSTFECYSLQKRNITLAKEIAAFKLVSDLDLNEEEVLKYATLGNGFNDKDTIDTLSKSMVRRNRDYKDLIAKRNELAAKCNQLEKGEARYSKKLEKAKEKILKLKARVQELETAAEVRENQYLKSLKASKMRKCTNNPENSLNSNNDVISTSNTPLHEQTKQTSTKSVRDSTVDNSTSQQFSRIANCIPTESKAVNVNGNKSTPALHKDRDFISLDDDASEFTEPLSGWPRRDYNDHYRDGAALSKPTVAKSDAAYEKKKETAVQGTYNLTDSSRIDIDVEMANNDVDLDDDITFIDNVQQVQPKVNIIKDSPPIIANPGDICFSGGLLGPDGSHRYLGKWCKRGQNGESQSAKGGLIAVGADGRGGRVKVLRTAGQTFKDEKENDKESKRLKVGPKTSNLRPQGCLQIEHFFAKVNH 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60747g00013 585 MobiDBLite consensus disorder prediction 300 343 - -
Stsc60747g00013 585 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 583 - -
Stsc60747g00013 585 CDD RING-H2 13 61 - -
Stsc60747g00013 585 Coils Coil 233 288 - -
Stsc60747g00013 585 SMART ring_2 13 60 IPR001841 -
Stsc60747g00013 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 62 IPR013083 -
Stsc60747g00013 585 ProSiteProfiles Zinc finger RING-type profile. 13 61 IPR001841 -
Stsc60747g00013 585 Coils Coil 103 137 - -
Stsc60747g00013 585 Pfam Ring finger domain 12 61 IPR001841 -
Stsc60747g00013 585 SUPERFAMILY RING/U-box 11 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60747g00013 Stsc-Chr60747 48357 51759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60747g00013 464 585 C3H Transcription Factor Family AT4G01270 39.535 2.07e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60747g00013 K11985 - gmx:100812811 658.677