LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60747g00012	ATGGACGACGATTGGGATCTCCACGCCGTCGTTAGAGGCTGCGCCACCACCACCACCACCTCCACCTCCACCACCACCACCACCACCACTTCCATCCAACCTCCACCTTCTTCTTCATGTGGATTCTTCTCTATTCTCCCCACTAATAATAACCAACAACAAAGCAATGTTTTTTCAGTTCCCAACAACAACCCTTTTGAATCACCAATCTCCATTGATGAACTTCATGATAATCATAATCTTTGCAAGCCTTTCTTCTTCAAATTACAGCCTTTTCACTCTTTTCAATCCTCCTCCTCTTCCTCTTCTCCTCCTCCTTCTTCTTTCTCTTATTCTTCTTCATCATCATCACTTAGTTCAGCCCTGACACAGCAGCATCAGAGTTGTAACAACAATAATAATAAGAACTCTCACCATGCAGATTCTGCCACCACCCCACGATCTAAGAGAAGGAAGAGTCAGCTTAAGAAAGTTTGTCAAGTTTCAGCAGAGAATCTCTCCTCAGACATATGGGCATGGAGGAAATATGGACAGAAACCCATCAAAGGTTCACCATATCCAAGAGGATATTATAGATGTAGCAGCTCAAAAGGATGTTTGGCTAGAAAACAAGTTGAAAGGAACAGATCAGATCCAACAATGTTCATAGTTACATTCACTGGTGAACACAACCACCCTGCTCCAACTCATAGAAACTCACTTGCTGGCTCTTCACGCCAAAAGCTACAATCAGGGGACACCGATGAAAAGGCCCTCACAATGAAGCCGGTCTCGGTTTCGGCTTCTCCTTCCACTTCAGGAGTGGAAGAAGAGGCTGAGGCCACCCCGGCGCAGAAGTCGGAGAGCGAAGAGGACAACATGGAGGATTATTTGATGAATGATGATGATGGTGGGGTTGAGGAAACTGATCCGCTTGGTTCACCAGATATTGAGATAACTGATGATTTCTTTGAAGGTTTGGATGAATTGACAGCAGCCACTGATGGAGATTCATGCTTTTCTAACCCCTTTTCAACAAGTAGTGTTCCTTCCCTTCCTCCATTGGTGGCCAATAGTGCTGCCACTACTGCTGGTGGTAGCTGA	1083	0.4534	MDDDWDLHAVVRGCATTTTTSTSTTTTTTTSIQPPPSSSCGFFSILPTNNNQQQSNVFSVPNNNPFESPISIDELHDNHNLCKPFFFKLQPFHSFQSSSSSSSPPPSSFSYSSSSSSLSSALTQQHQSCNNNNNKNSHHADSATTPRSKRRKSQLKKVCQVSAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTFTGEHNHPAPTHRNSLAGSSRQKLQSGDTDEKALTMKPVSVSASPSTSGVEEEAEATPAQKSESEEDNMEDYLMNDDDGGVEETDPLGSPDIEITDDFFEGLDELTAATDGDSCFSNPFSTSSVPSLPPLVANSAATTAGGS	360

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60747g00012	360	MobiDBLite	consensus disorder prediction	122	141	-	-
	Stsc60747g00012	360	MobiDBLite	consensus disorder prediction	122	158	-	-
	Stsc60747g00012	360	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	3	326	IPR044810	GO:0003700
	Stsc60747g00012	360	MobiDBLite	consensus disorder prediction	287	302	-	-
	Stsc60747g00012	360	ProSiteProfiles	WRKY domain profile.	162	228	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Stsc60747g00012	360	MobiDBLite	consensus disorder prediction	223	312	-	-
	Stsc60747g00012	360	MobiDBLite	consensus disorder prediction	257	271	-	-
	Stsc60747g00012	360	MobiDBLite	consensus disorder prediction	326	360	-	-
	Stsc60747g00012	360	MobiDBLite	consensus disorder prediction	225	242	-	-
	Stsc60747g00012	360	Pfam	WRKY DNA -binding domain	169	226	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Stsc60747g00012	360	SUPERFAMILY	WRKY DNA-binding domain	162	228	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Stsc60747g00012	360	Gene3D	WRKY domain	151	221	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Stsc60747g00012	360	SMART	WRKY_cls	167	227	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Stsc60747g00012	360	MobiDBLite	consensus disorder prediction	328	360	-	-
	Stsc60747g00012	360	FunFam	WRKY transcription factor 22	151	221	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60747g00012	Stsc-Chr60747	39376	41441	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60747g00012	1	359	WRKY Transcription Factor Family	AT4G01250	45.455	1.04e-76	236

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Stsc60747g00012		WRKY	8.2e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60747g00012	K13425		-	gmx:100815829	312.768