Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60746g00001 ATGATGCTATATTTAAAGGAAGAGCTGCCACGTTGGGTTTTGGAAAAAGGGCCAACCACTTTAGACATTCGGATAAAGTCAAGAGAAGCCACTTCATCAGATTGTTCTTCCTTTCTACGCCCTGGCATTGATATTTCTGTTCTTTCAACCTCCCAATCAACTCCTAGTAATTCTCCTCAACCTGTGAGGATTGATGGTAGAATAAATTCCATAAAGAGAAACCGCCATGATCCTAATTGTTCATGTCAATTTTATGTCAACTTCTATCTTAATCAAGGTTCATTTGGCACACAAAGAACTCTTAGCAAGCAAGTTAAAGTAATTTCATTAAATCAAATTTCAATCCTCCAAAGGATTGACCAAAATAGTATCTCTAAAGATAACTCTTCTAGTTCAAGGTGGGATTCATCAATGGACTGTTCCTCAGTACCTCAAACTAAATTACTCCTTGGGAAATTCTTATCTGATATTTCATGGCTAGTGATTGCATCTTTTATAAAGAAGGCTAAATTTGATGTAAGATCTGTGGATAACAAGATTGTGTACCAAGTTTTGGGAGGTAATAATAATGTTGCTAATGATTCTCAAATAGATGTTGTGAATTTCGAAGTTGATGGTGATGGTAATGTACAATCCATGGTTTCTCAGATTGATACACATGCTGCTAAGAAAATTGGTTATAATAAACAATGTGATGATGGTTATTCCCCTGAAGATGAAAAGGCAGAACCATGTTGTAATAATGAGGGACTAAGGCGGTCGAAGCGACGCCATGTTCAACCGGACCGATACCTTGGTTGCGAGGCTCCGGTGATTGATGTTAGTGCTCCTAGAACCTGGCCTTACAAGATGAGTGCGTCGAAAGAGGAAGGCAAAAAAGAAGAAGAGGAAGAAGAAGAGCCTATTCCATTAGCATGTAATAAGCCTTGCTTCCAAGTAAAATGGACTAAAGAAGATGTTGTTTCCAAGAAGAAAATCATGGAATGGAAGAAGTTAGGTGATGCAGATCAAGATGGAATCCAAACTCCAGTTCTTGTTTTTCCTCCTGCCAAGAAAGATGAACCACTTCCACTTCCAAAGAATCTTTATAATCTAAACGACAAGGACAACATGCAAGAAACAGGGAAAGAAGGAAAGGTGGAAGAATTTTCTGCAAGAATCCGTAGCGGTTATGGCGCCGCAAAGTTACACATGAAGAATTCAGTTGATCTAGATGATGTAGATATTGAACTTGGATTGGAGTGGACAAATTCCAAGAGAAGAGTTCAAGAGAAAAGAAAGCACCATTCGAGTTCAAGAACATATTCAAATAGTATCATGAATCTTGATGATGAAGAAAGATCCTACAAAGACAGAACCTTGAATGCAGCTTCATACAAGGAAATCATAGATTCATATCTGAGGAAAATTGAAAAAGTTCCTACTGTGGAAAAAGAACAACCAAGTATAATGGATCAGTGGATTGCTACTACAAGAGAATGTAATGAACAAAAGAATGAAATGGGAAAATCTCATGTGGAGGAGGAGGAAGAAGAAGAAATTTCTGAAACAGATAGGTTGTGGAGAGAAATGGAAATGTCAATGGCATCAAGTTATCTTGTTGAAGAAGAAACAAAGGATTCAGATGCAGTAGCTTTTGCTGAAACTACAGAAAATTGCAAAGAAGTTTGCCAGCATGAGAATAGATTGGATGATGAAATTGGAATCTACTGCATAAGATGCGGCGTTGTTAGCGTCGATATCAAATGCGTTGCAACAGAATTTCTGCCACAAAATGAGAGAACATGGCACTGGCAAGATGAGAAGCGAAGGAGTAGTGATTCAGAGAAGCCGGAGGGCGATGAAGATGCCGGCGACCACAAGTTTTTCGCAACCTCTAATGCTTCTAGAGATGAACCTATGCAAGAAGAAAATGGCAATAATGTTTGGGAGCTAGTTCCAGATCTGAAAGCAAAAATGCATGTCCACCAGAGAAAAGCATTTGAGTTTCTTTGGCAAAACATTGCAGGGTCAGTGGAACCATCAGAAATGGTGCAACGATCCAAAGCCATTGGAGGTTGTGTGATATCTCATTCTCCCGGAGCCGGAAAAACCTTGCTCGTGATCGCGTTCCTCCTCAGTTACCTGAAGCTTTTCCCAGGGAAAAGGCCACTCATTCTTGCTCCAAAGACTACTCTCTACACATGGTACAAGGAGTTCATCAAATGGGAGATTCCTTTACCGGTTTATCTCATCCATGGCCGCTCCTCACAGAAGGAGTTCAAAGAAGATACCGTGATCATTCCTGGCCTTCCAAAGTCAACCAATGATGTAAAGCATGTTGTTGATTGTCTACAAAAGATTCACAAATGGCATGAGCATCCAAGTGTCCTCATCATGGGCTATACATCGTTTCTTTCGCTTATGCGCGAGGATTCGAAATTCTCGCACAGAAAGTATATGGCGAAAGTCCTCAGAGAGAGCCCTGGGATCTTGGTTCTTGATGAAGGGCACAATCCTCGCAGCACGAAGTCGAATTTGAGGAAGGTTTTGATGAAGGTAAAGACAGAACTTCGAGTACTACTCTCTGGAACCTTGTTTCAGAACAATTTCTGTGAATATTTCAATACTTTATGTTTGGCAAGGCCTAGATTTGTTCATGAAGTTTTATCCGAGTTAGACGGTAAATACCGGAGTAACCGGGAGATTGCCGAGAAGGCAAGGCATCTGCTGGAGGCACGCGCCAGGAAATTCTTCTTGGATCAGATTGCCAAGAGGATAAACTCGAATGAAGGCGACGACACGGTGCAGGGTCTGAATTTGTTGAAGGAACTAACGAATGGATTCATTGATGTTTATGATGGAGGAAACTCTGAAACTCTGCCCGGTTTACAGATCTATACATTGGTGATGAACACAGCTGATATACAGTACAAGATTCTGCTTGAACTGCACAAGAAAATGGGTGAGCGCAATGGTTACCCTTTGGAGTTAGAGCTTCTTATAACACTTGGATCAATCCATCCATGGCTGGTGAAAACTGCAGCCTGTGCAGCTAAGTTCTTGAGTGTGGAACAGTTGAGGGAGTTAGATGAAGTAAGGAGTGATTTAAAGAAAGGGTCTAAGGTAAGGTTTGTTCTTAGCCTTGTGAGTCGTGTTTTCTTGAAGGAGAAGGTGTTGATCTTCTGCCATAACATTGCACCAGTGAAGCTGCTTGTGGAAATGTTTGAGAGAGTTTTTCATTGGAGAAGAGACAGAGAGATCTTGGTACTCAACGGGGAGCTTGAATTGTTCCAACGCGGGAAAGTTATCGATGAGTTCGAGGATCCTAGTAGTGTTTCGAGGGTGCTTCTTGCCTCGATCACGGCCTGCGGTGAAGGGATTAGTCTCACGGCGGCTTCGAGGGTGATCATGTTGGATTCGGAATGGAATCCGTCGAAGACGAAGCAAGCGATCGCGAGGGCCTTCAGGCCTGGACAGCAGAAGATGGTGTATGTGTATCAGTTACTGAGTTCAGATTCATTGGAGGTAGATAAGCATAGGAGAAACAAATGGAAAGAGTGGGTTTCTTGCATGATATTCAATGAGGAATCTGTGGAGGGTCCTTCACATAATATTGAGGATGATGTGCTTAGGGATATGGTTGAGGAGGACAGGTATAAATCATTCCATATGATCATGAAGAATGACAAGTATTCTGCAACAATTTGA 3690 0.4141 MMLYLKEELPRWVLEKGPTTLDIRIKSREATSSDCSSFLRPGIDISVLSTSQSTPSNSPQPVRIDGRINSIKRNRHDPNCSCQFYVNFYLNQGSFGTQRTLSKQVKVISLNQISILQRIDQNSISKDNSSSSRWDSSMDCSSVPQTKLLLGKFLSDISWLVIASFIKKAKFDVRSVDNKIVYQVLGGNNNVANDSQIDVVNFEVDGDGNVQSMVSQIDTHAAKKIGYNKQCDDGYSPEDEKAEPCCNNEGLRRSKRRHVQPDRYLGCEAPVIDVSAPRTWPYKMSASKEEGKKEEEEEEEPIPLACNKPCFQVKWTKEDVVSKKKIMEWKKLGDADQDGIQTPVLVFPPAKKDEPLPLPKNLYNLNDKDNMQETGKEGKVEEFSARIRSGYGAAKLHMKNSVDLDDVDIELGLEWTNSKRRVQEKRKHHSSSRTYSNSIMNLDDEERSYKDRTLNAASYKEIIDSYLRKIEKVPTVEKEQPSIMDQWIATTRECNEQKNEMGKSHVEEEEEEEISETDRLWREMEMSMASSYLVEEETKDSDAVAFAETTENCKEVCQHENRLDDEIGIYCIRCGVVSVDIKCVATEFLPQNERTWHWQDEKRRSSDSEKPEGDEDAGDHKFFATSNASRDEPMQEENGNNVWELVPDLKAKMHVHQRKAFEFLWQNIAGSVEPSEMVQRSKAIGGCVISHSPGAGKTLLVIAFLLSYLKLFPGKRPLILAPKTTLYTWYKEFIKWEIPLPVYLIHGRSSQKEFKEDTVIIPGLPKSTNDVKHVVDCLQKIHKWHEHPSVLIMGYTSFLSLMREDSKFSHRKYMAKVLRESPGILVLDEGHNPRSTKSNLRKVLMKVKTELRVLLSGTLFQNNFCEYFNTLCLARPRFVHEVLSELDGKYRSNREIAEKARHLLEARARKFFLDQIAKRINSNEGDDTVQGLNLLKELTNGFIDVYDGGNSETLPGLQIYTLVMNTADIQYKILLELHKKMGERNGYPLELELLITLGSIHPWLVKTAACAAKFLSVEQLRELDEVRSDLKKGSKVRFVLSLVSRVFLKEKVLIFCHNIAPVKLLVEMFERVFHWRRDREILVLNGELELFQRGKVIDEFEDPSSVSRVLLASITACGEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLSSDSLEVDKHRRNKWKEWVSCMIFNEESVEGPSHNIEDDVLRDMVEEDRYKSFHMIMKNDKYSATI 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60746g00001 1229 MobiDBLite consensus disorder prediction 599 637 - -
Stsc60746g00001 1229 SMART helicmild6 1063 1152 IPR001650 -
Stsc60746g00001 1229 Pfam Helicase conserved C-terminal domain 1037 1151 IPR001650 -
Stsc60746g00001 1229 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 678 877 IPR014001 -
Stsc60746g00001 1229 CDD DEXHc_ATRX-like 653 895 - -
Stsc60746g00001 1229 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 22 1226 IPR044567 GO:0080188
Stsc60746g00001 1229 Pfam SNF2-related domain 653 913 IPR000330 GO:0005524|GO:0140658
Stsc60746g00001 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 880 IPR027417 -
Stsc60746g00001 1229 CDD SF2_C_SNF 1034 1163 - -
Stsc60746g00001 1229 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1042 1193 IPR001650 -
Stsc60746g00001 1229 MobiDBLite consensus disorder prediction 599 621 - -
Stsc60746g00001 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 958 1212 IPR027417 -
Stsc60746g00001 1229 Gene3D - 623 918 IPR038718 -
Stsc60746g00001 1229 SMART ultradead3 649 885 IPR014001 -
Stsc60746g00001 1229 Gene3D - 964 1228 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60746g00001 Stsc-Chr60746 4354 9097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60746g00001 1081 1169 RAD5 or RAD16-like Gene Family AT5G05130 43.333 4.29e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc60746g00001 SNF2_N 2.2e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60746g00001 K10875 - gmx:100811703 1271.14