Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60740g00006 ATGATGAAGAAGAAAGAAGAAGAAGAAGATGAGAAATCAAAAGCAGAGAGAATGGATAACAATAATAGGAAGAAGAAGAGTAGTAATGAGGAAGAAGAGCCACCAAAGGGTTACATCCACGTCAGAGCAAGAAGGGGTCAAGCAACTGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGATGTTGCAGAGGCTTGTGCCAGGCTGTGATAAGGTGACTGGAAAAGCCCTTATGTTGGATGAAATAATCAATTATGTCCAATCTTTACAGAATCAAGTAGAGTTCTTGTCAATGAAGCTTGCTTCAGTGAGTCCCATTTTCTATGACATGGCAACAGATCTAGACAATAATACTCTCTTGGTTAAACCAGAGAAATTAAATATCCAACATTGCAGTGGCTCCAACAACCAACAAGCTACAACAACCACCACCACGGCTGCCGCCGTCACCGTCTTCCCCACCACTAATAATGATCACTATCTCTTGGATGGTAGTTCAGCTTCAGCTTTTCTTCAAGCCCAGAGATCAAATATCTTCTCCGAGGGTAGTGGTCAATTCTGGGACACAGAAGAGCAAAGACAAAAATTTCTTCATCCATATGAATTCATCACCAACAACTTGTGTTCTTTTCATTAG 660 0.4121 MMKKKEEEEDEKSKAERMDNNNRKKKSSNEEEEPPKGYIHVRARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVSPIFYDMATDLDNNTLLVKPEKLNIQHCSGSNNQQATTTTTTAAAVTVFPTTNNDHYLLDGSSASAFLQAQRSNIFSEGSGQFWDTEEQRQKFLHPYEFITNNLCSFH 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60740g00006 219 FunFam Basic helix-loop-helix transcription factor 44 116 - -
Stsc60740g00006 219 Gene3D - 44 113 IPR036638 GO:0046983
Stsc60740g00006 219 Coils Coil 1 21 - -
Stsc60740g00006 219 CDD bHLH_AtBPE_like 37 122 - -
Stsc60740g00006 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 112 IPR036638 GO:0046983
Stsc60740g00006 219 SMART finulus 53 103 IPR011598 GO:0046983
Stsc60740g00006 219 MobiDBLite consensus disorder prediction 1 57 - -
Stsc60740g00006 219 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 5 151 IPR024097 GO:0006355
Stsc60740g00006 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 97 IPR011598 GO:0046983
Stsc60740g00006 219 Pfam Helix-loop-helix DNA-binding domain 51 98 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60740g00006 Stsc-Chr60740 45085 47121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60740g00006 16 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 55.814 2.47e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60740g00006 HLH 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60740g00006 - - ahf:112708119 313.538