Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60740g00002 ATGGATTGTGAAGCTATGCTGCAGATATCATCAAATGGTTTGAGATTATTGCAGCAAAACAAAAAAGTGGATGAATACATGGATGAGGAGGTTGAATGCTCTTTTGAAGAATTTTATGATGATGTTCATACAGAGTTCCAGAAATTTGGAGAAATTGTGAACTTCAAGGTGTGTAAAAATGGCGCATTTCACTTGCGTGGAAATGTCTACGTGCATTATAAGTTTTTGGACTCTGCTTTGCTTGCGTACAACACTATTAATGGGCGCTACTTTGCTGGGAAACAGGTAAGTTGTAACTTCGTTAGTTTGACAAGATGGAAGGCTGCCATATGTGGCGAGTATATGAAGTCAGGTTACAAGACGTGCTCCCATGGCTCAGCATGCAATTTTATACACTGTTTCCGAGAGCAAGAAAATTTGAGTTTCCGAAAGAATACCGGCGAGATGTCAAAATCAGATTCTTTCAGGTATCACTCAAGTAGATCAAGATCTAGGGAGAGGGATCAGTTGAAAAGTTATTCTAGTAGAAGAAAACATAGAGATGAACGAAGGCAAAGAACTCCTGATGAGGGATTGAATGGCAATTCAAAACATAATCATAAAATTAAGCACAAAACTCCGGATTCTGATTCCAATAGGGAATTGTTGGAAAAAAATGAAAATAGGGAAGGTCACCATAAACATTCTAGAAAAAGCTCGTTACATAGTGACAAGGATGACAGTTGCAGAAGCCATGATGATGAATTTGATACAGATTTGGCTCCAATTGGTAAGGACGATGAAGTAGAACATGGAAAAGAACCAAGAAGATCTAAGAAGGGGAAGAGAGATAGACGGGATTCAGAGCGCCATACCAGTAGAAGGAAAAACTCACAGCATCATAGTAGGGACAATAGAACTGGTGAAGCTGAATCTAATAAAGATTTGTTTGATCAAGGAGACCTGGAACCCCATGATAGCTCTCGGAAAAGCTCGAGACACAAGAGGTCTGGTTATCGAGGAAACAAGAAGGACTATGATTGTGAACATGATGAAGTTGATGAAGATTGGTCTAAGAGGGGGAGACACAGAAGATCTGGATGTCGAGATGACTTTGAAGACCATGAAAATGAACGTGAAGCCGATAGAGGTTGGTCACAGTGGGATAGTGATGGAAGATTGCATCGTCACAAAAAGTAG 1179 0.3995 MDCEAMLQISSNGLRLLQQNKKVDEYMDEEVECSFEEFYDDVHTEFQKFGEIVNFKVCKNGAFHLRGNVYVHYKFLDSALLAYNTINGRYFAGKQVSCNFVSLTRWKAAICGEYMKSGYKTCSHGSACNFIHCFREQENLSFRKNTGEMSKSDSFRYHSSRSRSRERDQLKSYSSRRKHRDERRQRTPDEGLNGNSKHNHKIKHKTPDSDSNRELLEKNENREGHHKHSRKSSLHSDKDDSCRSHDDEFDTDLAPIGKDDEVEHGKEPRRSKKGKRDRRDSERHTSRRKNSQHHSRDNRTGEAESNKDLFDQGDLEPHDSSRKSSRHKRSGYRGNKKDYDCEHDEVDEDWSKRGRHRRSGCRDDFEDHENEREADRGWSQWDSDGRLHRHKK 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60740g00002 392 MobiDBLite consensus disorder prediction 148 392 - -
Stsc60740g00002 392 SMART c3hfinal6 105 134 IPR000571 GO:0046872
Stsc60740g00002 392 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 12 239 IPR009145 GO:0000398|GO:0003723|GO:0089701
Stsc60740g00002 392 MobiDBLite consensus disorder prediction 149 227 - -
Stsc60740g00002 392 ProSiteProfiles Zinc finger C3H1-type profile. 105 135 IPR000571 GO:0046872
Stsc60740g00002 392 FunFam Zinc finger CCCH domain-containing protein 5 5 101 - -
Stsc60740g00002 392 SUPERFAMILY RNA-binding domain, RBD 35 103 IPR035979 GO:0003676
Stsc60740g00002 392 MobiDBLite consensus disorder prediction 233 287 - -
Stsc60740g00002 392 MobiDBLite consensus disorder prediction 295 323 - -
Stsc60740g00002 392 PRINTS U2 auxiliary factor small subunit signature 125 137 IPR009145 GO:0000398|GO:0003723|GO:0089701
Stsc60740g00002 392 PRINTS U2 auxiliary factor small subunit signature 32 47 IPR009145 GO:0000398|GO:0003723|GO:0089701
Stsc60740g00002 392 PRINTS U2 auxiliary factor small subunit signature 60 82 IPR009145 GO:0000398|GO:0003723|GO:0089701
Stsc60740g00002 392 PRINTS U2 auxiliary factor small subunit signature 87 111 IPR009145 GO:0000398|GO:0003723|GO:0089701
Stsc60740g00002 392 MobiDBLite consensus disorder prediction 333 386 - -
Stsc60740g00002 392 Gene3D - 7 101 IPR012677 -
Stsc60740g00002 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 106 134 IPR000571 GO:0046872
Stsc60740g00002 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 103 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60740g00002 Stsc-Chr60740 24139 28715 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc60740g00002 zf-CCCH 9.5e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60740g00002 K24273 - cam:101495256 311.227