Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60739g00001 ATGCAGCTCGGCTTTGCCATGCTCTGTGCCGGCTCCGTCCGCGCCAAGAACACCATGAACATCATGCTTACCAACGTTCTTGACGCCGCGGCCGGTGGCCTCTCCTACTACCTCTTCGGCTACGCCTTCGCTTTCGGAGGCCCCTCAAACGGCTTCATCGGGCGCCATTCATTCGGCCTCACCGACTTCCCCTCTCCCTCCGCAGACTACAGCTTCTTTCTGTACCAGTGGGCTTTCGCCATCGCCGCCGCAGGCATCACTAGCGGCTCCATCGCCGAGCGGACGCAATTCGTCGCCTACCTTATTTACTCCTCCTTCCTGACCGGCTTCGTCTATCCTATCGTTTCTCATTGGTTTTGGTCGTCAGATGGGTGGGCCAGCGCGACCAGAACCAATGGAAGCCTCTTGTTCGGATCCGGCGTGATTGATTTCGCCGGATCCGGAGTGGTTCACATGGTTGGCGGTATTGCTGGCCTTTGGGGAGCATTGGTAGAAGGACCACGGATTGGTCGCTTTGACAGAAGTGGCAGGTCTGTGGTTCTTCGAGGCCATAGCGCTTCCCTGGTTGTGCTAGGTTCGTTTTTGTTATGGTTCGGTTGGTACGGTTTCAACCCTGGATCCTTTCTAACCATTGCGAAAAGCTACGGTGAAAGTGGTGGGTATTACGGACAGTGGAGCGCGATAGGGAGGACAGCTGTCACTACTACATTGGCTGGTTGCACTGCGGCGTTGACTACGTTGTTCAGTAAACGGTTACTGGTTGGACACTGGAACGTGATCGATGTTTGTAACGGTTTGCTTGGTGGTTTCGCTGCCATAACGTCCGGGTGCTCTGTAGTTGAGCCTTGGGCGGCGATTGTGTGCGGCTTTGTTGCGGCGTGGGTGCTCATGGGCCTCAACATGCTGGCCGCAAAGGTCGAATTTGACGACCCGTTGGAGGCCGCCCAGCTCCACGGAGGGTGTGGCGCATGGGGAGTTCTGTTCACGGGGCTGTTTGCAAAGAAGAAGTACGTGGCTGAGGTGTACGGCTCCGGGAGGCCTTACGGGTTGTTTATGGGCGGCGGAGGAAAGCTGCTAGCAGCACAGGTTATACAGATTCTAGTAATTTGCGGGTGGGTAACGGCGACGATGCTACCTCTGTTTTACGGGCTTCACAAGATGAGGCTGTTGAGGATATCAAGGGAAGATGAGACGGCCGGTATGGACTTGACGAGGCACGGTGGGTTTGCTTATGCGTATCATGATGAAGATGATGGGTTTGCAAAGCCCGCCATGTTTATGATGGGTAGGATTGAGCCCTCTCCTCAGGCCCACCCACAGTGA 1323 0.5578 MQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGYAFAFGGPSNGFIGRHSFGLTDFPSPSADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWFWSSDGWASATRTNGSLLFGSGVIDFAGSGVVHMVGGIAGLWGALVEGPRIGRFDRSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTIAKSYGESGGYYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVIDVCNGLLGGFAAITSGCSVVEPWAAIVCGFVAAWVLMGLNMLAAKVEFDDPLEAAQLHGGCGAWGVLFTGLFAKKKYVAEVYGSGRPYGLFMGGGGKLLAAQVIQILVICGWVTATMLPLFYGLHKMRLLRISREDETAGMDLTRHGGFAYAYHDEDDGFAKPAMFMMGRIEPSPQAHPQ 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60739g00001 440 NCBIfam ammonium transporter 1 411 IPR001905 GO:0008519|GO:0016020|GO:0072488
Stsc60739g00001 440 ProSitePatterns Ammonium transporters signature. 143 168 IPR018047 GO:0008519|GO:0016020|GO:0072488
Stsc60739g00001 440 PANTHER AMMONIUM TRANSPORTER 1 407 - -
Stsc60739g00001 440 FunFam Ammonium transporter 1 426 - -
Stsc60739g00001 440 Pfam Ammonium Transporter Family 1 411 IPR024041 GO:0008519|GO:0016020|GO:0072488
Stsc60739g00001 440 SUPERFAMILY Ammonium transporter 1 392 - -
Stsc60739g00001 440 Gene3D Ammonium transporter AmtB like domains 1 426 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60739g00001 Stsc-Chr60739 6343 9726 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60739g00001 1 437 Inorganic Solute Cotransporters AT1G64780 82.273 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60739g00001 K03320 K07573 gmx:100797209 789.26