Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60738g00008 ATGACAGAAACAAAGTCAACTAGCAAGATTTCCAAGAAACATGACTCGAAAAAAAATTCTGGTCCCAGCAATCAGCCTTCAAGGAAACAACATCGAAAGGGTGAAAACCCTACGCGATTTGTTCCAGCTCCTGACCCGCCTTCTGATTTTGGACATTCTGACTCGTGGGTCTGCAAGAATTCAGCTTGTAGAGCAGTTCTATCTAAAGATGATACATTTTGTAGAAGGTGCTCTTGCTGTATTTGCCACCTTTTCGATGATAACAAGGACCCTAGTCTTTGGTTGGTATGCACATCCGACTCCGCCCAAGGGGACTCCTGTGGTTTGTCTTGCCATATCGAGTGTGCTCTTCAGCATGAAAAAGTGGGAGTAGTTGATCATGGGCAACTGATGCAACTAGATGGCGGTTATTGTTGTGCATCCTGCGGTAAAGTTACTGGGATACTAGGATGTTGGAAGAAGCAGCTAAATATAGCGAAAGATGCTCGGCGTTTAGATGTGCTGTGTTACCGGATATATTTGAGCTTCAGGCTTCTGAAAGGAAGTTTGAGGTTTAAACAACTGCATGAAATTGTACAAGAGGCGAAGGCTAAATTAGAAACGGAAGTTGGTTCAGTTAATGGGGTTTCTTCCAAGATGGCGCGTGGCATTGTCAGCAGACTCCCTATTGCCGGTGATGTACAGAAACTTTGCTCTCTTGCTATCGAGAAAGCCGATGAATGGTTGGCCACTGTACCCAATTCAAATCCAGAATCCGGAGAGGGCTCTCTTCCTGCTGCCTGCAAGTTTATTTTCGAAGAGGTAACAGCTTCATCGGTCAAAATAATTTTGATTGTAATGGCGAATGCATCTTCCGAGGAAATTAAGGGTTACAAGCTCTGGTATTACAAGAGTAGGGAGGAATCACACACAAAAGATCCTGGTGATTTAGGTCATTCCGAGGCCAAGTGTTTCACCAAGAGCATAGAGATATTGGAAAAAAGTCCATCTTCGTCGGTTGCCATCGACCGCAAGAAGGAGAGCCTTCAAACTGGAGAAATGGAGCCGAGCTCTTCGATGGCTGACTCTGGATTTAAAGTTCGAGACCTTGGAAAACTCTTGCATCTTGCCTGGGCTCAAGAACAAGGTTGCTTGGAGGGATTTTGTGGGGCTGATTTGAGAAATTGCTGTGCAGAGAGAGAAATGACCGTGCCTCGCAATCCGGAAGAGCGATTCCCTTCCATTTCACGAGGCCTTGATTTAAATGTTGCTTCAGTGCCTGATTTGAATGAAGAACTTACACCTCCTTTTGAGTCTTCCAGGGATGAAGATAATGGTTGCACTTTGCAGCAGGCTATTGAGCCAGACGATGATGCGGCTTCCCATGATCTCGAAAAAAACTGTTTGGCAGGGTCGGATGGTAGTGGTGATTCCCAAATCTGGACACAAGGGCCGACCGGAGAAGTCCCGGCTGTTGACTCTCGCGTAGATGCATGCAAGAAAAGGTTAGCAAGCACAAATGAAGAGACACATGATTGTGACAGCACTTTGATGAATGGATCTCCCTTGCACATGCCGGATGGTTCATTCTCCTTGGACGAGAATTTCGAGTATTGCGTGAAAGTGATTCGTTGGCTAGAATGCCAGGGTCATATTAAACAGGAGTTTCGGTTGAAGTTACTGACATGGTTCAGTTTGAGGTCAACAGAACAAGAACGTAGGGTGGTTAACACGTTCATTCAGACTCTGATTGATGATCCGAGTAGTTTGGCAGGGCAACTGGTCGACTCATTCTCTGATATTATATCAATTAAGAGGGCAAGAAATGGGTTATGTAACAAAGCCGTGGGATCAAATTAA 1839 0.4519 MTETKSTSKISKKHDSKKNSGPSNQPSRKQHRKGENPTRFVPAPDPPSDFGHSDSWVCKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTSDSAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRLDVLCYRIYLSFRLLKGSLRFKQLHEIVQEAKAKLETEVGSVNGVSSKMARGIVSRLPIAGDVQKLCSLAIEKADEWLATVPNSNPESGEGSLPAACKFIFEEVTASSVKIILIVMANASSEEIKGYKLWYYKSREESHTKDPGDLGHSEAKCFTKSIEILEKSPSSSVAIDRKKESLQTGEMEPSSSMADSGFKVRDLGKLLHLAWAQEQGCLEGFCGADLRNCCAEREMTVPRNPEERFPSISRGLDLNVASVPDLNEELTPPFESSRDEDNGCTLQQAIEPDDDAASHDLEKNCLAGSDGSGDSQIWTQGPTGEVPAVDSRVDACKKRLASTNEETHDCDSTLMNGSPLHMPDGSFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISIKRARNGLCNKAVGSN 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60738g00008 612 Pfam PHD - plant homeodomain finger protein 58 176 IPR032881 -
Stsc60738g00008 612 MobiDBLite consensus disorder prediction 335 355 - -
Stsc60738g00008 612 PANTHER VIN3-LIKE PROTEIN 2-RELATED 7 307 IPR044514 GO:0010048|GO:0040029
Stsc60738g00008 612 MobiDBLite consensus disorder prediction 466 486 - -
Stsc60738g00008 612 MobiDBLite consensus disorder prediction 1 46 - -
Stsc60738g00008 612 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60738g00008 Stsc-Chr60738 38944 41690 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60738g00008 55 604 PHD Gene Family AT3G24440 46.296 3.54e-161 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60738g00008 - - gmx:100780157 1041.57