Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60738g00001 ATGGCGAGTAGGCTGAAGGAAGACGAGAAGAACGAGCGGGTAATTCGCGGTCTTCTTAAGCTTGAACCGAATCGAAGATGCATTAACTGCAACAGCTTGGGACCACAATATGTCTGCACAAATTTCTGGACATTTGTTTGCACAAACTGTAGTGGAATACACCGGGAATTCACCCACAGGGTTAAATCAATTTCAATGGCTAAATTTACTTCCCAAGAAGTTAATGCTCTTCAAGCAGGGGGAAATCAGCGTGCAAAAGAAATTTATTTTAAAGAATGGGATGCACAACGTAATTCTTTCCCTGATAGCAGTAATGTTGATCGGCTCCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATTTAGTGGAGAGAGGGCTAATGACAAACCACCAAGAGGAAAGGGTGACAATGATATGTATCAAGGAGGGTCTAGAAGCCCCCCGCAATATGGTGACTATGGGAGAAGTCCTGGTCGTCCTCCAATAGTCAATGATTGGCGACGTGAAGATCGTAGAGTATCTGATGGGGATTATAAGGTAGAAAATCAATCTCCTGATCGAGCCAGAGATGTTGGTTCTTCCAGTCCACCTGTGGTCCGGCCTGTTAGAGAGATATTGGGAGAAAATGTAGTACCTCTTCGGATAAGTGAACCACCCAAACCAAACAGTGGAAGAGCTGCAGATGGCTCTGCATTGACACAGAGAACCGCATCTTCCAGTAGCTTGGCGTCCAGCAATGGGAATCCAGTGGATGTTAAGCCTGAGATTACAAAGAGCCTTATTGATTTCGATGCTGATCCTGAACCTCCTGTTGCTCCAGCGATTTCTCCTGCCCAACAAACTACTGCTCCTCAACCTGTTATGCAGCCAGAAAATTCCAGGGCTGATAATTGGGCCTCTTTTGATGTTGCTCCTCAAGCTACAGCAAATTCTAATCCAAGCCCGGTGAATGTAAATCCACTTGAATCTGTGTTGTCCCAATTGTCAGTGCCAGCTTCTTTACCTTCTCATGTTTCTGGAGTCCAAGCTGGTCCATATGTTGCAACAGCCATTCCTGTGGTTGATGTGACAACACCTGCAAGTGTCGGCGGTTTCTCAGCTTTCCCACAGAGTGGTTCTTCAGGACCTTCTCCTGGACCAGCAACAGCACCGCCTCCTAATAATGCAGGACAGTGGGCCGGTATGCAGCATCAGCAACCATTGTTCCAAGCTAATGCTACTCAGTCCACACAACAATTTACACCACCTGTAGGTGGAGCTGTAAGCAATCAGCCATGGAATATATCTTCTGTACCTACAGTTCAAGGGCATCCAAATACAGCAATCCCACATGCATCCCATGATGCTATAAATCCTGTCAATACAACCAGTGTTGTTTCACAACCTTCCACTGAAGTGAAACCAAGTGGAAGAAAAGAACTTCCTGAGGACCTATTCACTATAAAATACCCATCCTACCCTGCACCGGTTCCTGGTTGGCAAATGGGTCTTCCCCATGGCATGGGTCTTCCCCGTGGCATGGGTATCTCAGTGCAATATAATAACATGGTGGCTATGCCAAGTTTTCCGCAGCAATCAAAATCTGTCAATCCATTTGATGCTGGCGGTGAATCTCCCCAAGTTCAAGTGCCAACTTTTCCTTCCATGTCATCTTTGCATGGTGCTCTGCCCAGTATGCCACCTTCAGGAGCAATTCATCCTTCAAGCCTGGGTAATCCATCTCATAACTGGACTCCACCCCCGTCATCATCATACGTATCTGTCCTGCCTGGACAAGCACAAACTCATCCATCAGCTATGGGACCAAGGACTTACATGGTACAACAAATGCCACCACCTAACATGGCAATGCCAAGGCCAGAAGCTAGTAGTTTTGGAGCTGGAGGAGCTGTTTTCGGCTTGTCAAATCCAGAACAGCAGCTAACTAATTCATTCTCCACCACTCCTGCCCCTAATGCCTTCCCAGCAGGCGGGAACCCATTTGGCTGA 1992 0.4674 MASRLKEDEKNERVIRGLLKLEPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTSQEVNALQAGGNQRAKEIYFKEWDAQRNSFPDSSNVDRLRDFIKHVYVDRRFSGERANDKPPRGKGDNDMYQGGSRSPPQYGDYGRSPGRPPIVNDWRREDRRVSDGDYKVENQSPDRARDVGSSSPPVVRPVREILGENVVPLRISEPPKPNSGRAADGSALTQRTASSSSLASSNGNPVDVKPEITKSLIDFDADPEPPVAPAISPAQQTTAPQPVMQPENSRADNWASFDVAPQATANSNPSPVNVNPLESVLSQLSVPASLPSHVSGVQAGPYVATAIPVVDVTTPASVGGFSAFPQSGSSGPSPGPATAPPPNNAGQWAGMQHQQPLFQANATQSTQQFTPPVGGAVSNQPWNISSVPTVQGHPNTAIPHASHDAINPVNTTSVVSQPSTEVKPSGRKELPEDLFTIKYPSYPAPVPGWQMGLPHGMGLPRGMGISVQYNNMVAMPSFPQQSKSVNPFDAGGESPQVQVPTFPSMSSLHGALPSMPPSGAIHPSSLGNPSHNWTPPPSSSYVSVLPGQAQTHPSAMGPRTYMVQQMPPPNMAMPRPEASSFGAGGAVFGLSNPEQQLTNSFSTTPAPNAFPAGGNPFG 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60738g00001 663 PANTHER ARFGAP/RECO-RELATED 1 663 IPR044820 GO:0005096
Stsc60738g00001 663 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Stsc60738g00001 663 MobiDBLite consensus disorder prediction 163 187 - -
Stsc60738g00001 663 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Stsc60738g00001 663 MobiDBLite consensus disorder prediction 640 654 - -
Stsc60738g00001 663 MobiDBLite consensus disorder prediction 228 253 - -
Stsc60738g00001 663 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Stsc60738g00001 663 MobiDBLite consensus disorder prediction 276 294 - -
Stsc60738g00001 663 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Stsc60738g00001 663 MobiDBLite consensus disorder prediction 368 394 - -
Stsc60738g00001 663 MobiDBLite consensus disorder prediction 123 294 - -
Stsc60738g00001 663 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Stsc60738g00001 663 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Stsc60738g00001 663 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Stsc60738g00001 663 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Stsc60738g00001 663 CDD ArfGap_AGFG 12 122 - -
Stsc60738g00001 663 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Stsc60738g00001 663 MobiDBLite consensus disorder prediction 640 663 - -
Stsc60738g00001 663 MobiDBLite consensus disorder prediction 563 600 - -
Stsc60738g00001 663 MobiDBLite consensus disorder prediction 566 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60738g00001 Stsc-Chr60738 711 7930 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60738g00001 12 122 C2H2 Transcription Factor Family AT4G21160 29.839 4.69e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60738g00001 - - gmx:102669541 863.603