Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60737g00002 ATGACCGTGGAGGACCAAATTGACCGGTTCCCGGTGGGTATGCGTGTTCTCGCTGTCGATGATGACCCAACTTGCCTCAAAGTCTTGGAGAATCTCCTTCGCAAATGCCAATACCATGTTACTACCACTAATCAAGCAATTGAGGCGCTGAGAATGTTGAGGGAAAACAGGAACAAGTTTGACCTCGTCATTAGCGACGTGAATATGCCTGACATGGATGGATTTAAGCTCCTTGAATTGGTGGGGCTTGAAATGGACTTACCTGTTATCATGTTGTCTGGACACAGTGACACAAAGCTGGTGATGAAGGGTGTTACACATGGTGCAGTTGACTATTTGCTGAAACCTGTTCGTATTGAAGAGCTAAAGAACATTTGGCAACATGTTGTCCGAAAGAAGAATTTTGATCCCAGGGATCAGAATAAGGCTTCCAATGACAAAAGGGGTCCCAATAATGCTGAGGAAGGTAATCAAAGTATCATGTCCGATGACGGCGGTGACCAGAATAAAAATCTTGGCAAAAAACGAAAGGACCAAACTGAAGAAGAGGAAGATGATGGTGAAGGCAATGGAGAGGATAATGATGACCCTTCATCACAAAAGAAGCCTCGTGTTGTTTGGTCTGTCGAGCTTCACAGAAAATTTGTTGCAGCAGTTAATCAACTTGGCCTTGATAAGGCTGTCCCTAAGAAAATACTTGACCTGATGAATGTTGAAGGACTTACTAGGGAAAATGTGGCAAGCCACCTGCAGAAATATAGGCTCTATCTGAAAAAGGCAACCCAGCAAGCTAGCATGGTTGCTGCGTTGGGTAGTACCGATTCATACCTGAGAATGGGTTCAATAGATGGATATGCAGAGTTTTGCACCCCTACTGGTTCAGGAAGGATTTCAAGCAACGCATTGCAATCATATGCCTCGAGTGGAATCTTCGGCAGGCTGAATTCCCCAGCTAGCTTGAGCATGAGAAGCATTAGTTCTTCCACTCTAATCCAGCCTCCTGTTCAGCCTCCAAACCTGAACAGCACCTTGAGCCCTCTGGGTAACATTCAGGCATCGATATTTCCAGCAAATCAAACCCCAGGTTTATTACACGGAATTCCAACATCGATTGAGCTTAATCAGTCTAAGCAAAACTGTACAACAGGTATAACACAAGTAAATCAAGTTAGTTGTAGTGGATTTACTGCTGCCTCTGGCTTCCGTGACAGTAGGCATACAGTCGGTACAGCAAGCAATTCTCTACCTTCAGCTGCGTCAAGTAATTCTTTAATGTTACAAGGAAACTCACAACAAACACATAATTTGGGAGCATTTAGAAATCAGCCTCCTGTTAGACCAGCTTCTTTTGGCACAGATTCCTTTGATGTTGGCATTTGTGGGCCGTCTAATATGTTGGATTATAATCGGTGTAATGAAAACTGGCAGAATGCAGCACAGTTGTCTAAATTTCCTGCCCATCCCTTGCCATTGTGTGAGCCGTTCAATAACGACCCACTGCCTTCCACTGGCATAAGTGTTACCAACACAAATACTCATATTGGTCACAGTCCTGTTGATTATTCATCCAGAGTTGCGATTTCTATTCCTTTGGAGGATACAGGAAATGAGCTGCAGCGCCAAGAAGGCTTGATTGGGAATATTCTACAGTCTTCGAGTTATACAACACCATCTCAAAGGTGGGAAGAACATAAACTTGAATACAGCCAAAACTTGAGCCGTCCCTTCAACTCTGTAAACTCTGAAGTTTCTTTGAGTCGTGTAACAAGTTCTTTGGGGCATAACGTAAACCAAAAGAATGCAACTTGTAGCAACAGCGTTGATGCATCATTTGTTGCCCAACTGAGTGGAGCTCCTCCGTCAATCACCCGGTGCACTAATGATGACACAACACTGAAGTCAAATGATGCCTACATCTTGGAACAAATGAAGTCCCAAGATGGATTTATTCAGAATAATTTTGGCACCTTGGATGACATAATGGTCCCAATAGTCAAAAGGGAGCAAAATGAATCGACATTTTTAGATGGAGAAATGGGATTCGAGGCTTACCCTGTAGGATCATGTATCTGA 2073 0.4356 MTVEDQIDRFPVGMRVLAVDDDPTCLKVLENLLRKCQYHVTTTNQAIEALRMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSGHSDTKLVMKGVTHGAVDYLLKPVRIEELKNIWQHVVRKKNFDPRDQNKASNDKRGPNNAEEGNQSIMSDDGGDQNKNLGKKRKDQTEEEEDDGEGNGEDNDDPSSQKKPRVVWSVELHRKFVAAVNQLGLDKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKATQQASMVAALGSTDSYLRMGSIDGYAEFCTPTGSGRISSNALQSYASSGIFGRLNSPASLSMRSISSSTLIQPPVQPPNLNSTLSPLGNIQASIFPANQTPGLLHGIPTSIELNQSKQNCTTGITQVNQVSCSGFTAASGFRDSRHTVGTASNSLPSAASSNSLMLQGNSQQTHNLGAFRNQPPVRPASFGTDSFDVGICGPSNMLDYNRCNENWQNAAQLSKFPAHPLPLCEPFNNDPLPSTGISVTNTNTHIGHSPVDYSSRVAISIPLEDTGNELQRQEGLIGNILQSSSYTTPSQRWEEHKLEYSQNLSRPFNSVNSEVSLSRVTSSLGHNVNQKNATCSNSVDASFVAQLSGAPPSITRCTNDDTTLKSNDAYILEQMKSQDGFIQNNFGTLDDIMVPIVKREQNESTFLDGEMGFEAYPVGSCI 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60737g00002 690 Gene3D - 13 149 - -
Stsc60737g00002 690 SUPERFAMILY Homeodomain-like 200 259 IPR009057 -
Stsc60737g00002 690 CDD REC_typeB_ARR-like 16 130 - -
Stsc60737g00002 690 Gene3D - 198 260 - -
Stsc60737g00002 690 MobiDBLite consensus disorder prediction 150 166 - -
Stsc60737g00002 690 SUPERFAMILY CheY-like 13 136 IPR011006 -
Stsc60737g00002 690 NCBIfam myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677
Stsc60737g00002 690 SMART REC_2 14 126 IPR001789 GO:0000160
Stsc60737g00002 690 Pfam Response regulator receiver domain 16 124 IPR001789 GO:0000160
Stsc60737g00002 690 MobiDBLite consensus disorder prediction 168 182 - -
Stsc60737g00002 690 PIRSF RR_ARR_type-B 1 690 IPR017053 GO:0003677|GO:0003700|GO:0009736
Stsc60737g00002 690 FunFam Two-component response regulator 198 261 - -
Stsc60737g00002 690 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 374 IPR045279 GO:0009736
Stsc60737g00002 690 Pfam Myb-like DNA-binding domain 204 254 IPR001005 -
Stsc60737g00002 690 ProSiteProfiles Response regulatory domain profile. 15 130 IPR001789 GO:0000160
Stsc60737g00002 690 MobiDBLite consensus disorder prediction 136 202 - -
Stsc60737g00002 690 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 258 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60737g00002 Stsc-Chr60737 37861 42613 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60737g00002 1 690 Response Regulator Gene Family AT2G25180 41.690 1.82e-134 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc60737g00002 Response_reg 2.3e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60737g00002 K14491 - gmx:100776075 994.186