Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60733g00005 ATGGAAGCCAGATTTGGGGGGAAGAATCAGTTTTTATATGGAGGTGTGGTTCAAGAAATGAAAGGTGTTGGTAAGAGGAGTTTGGAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTCTTCACTGCTCAACAACTCAATTCGGTTCCATCAGATTGTAGGAGCCGCCAATTTTTCCCACCAAATCCTGAGATTCCTGCAAATAGTAATGCTATCTCTTCTTCAATCAACCCTGTTGAAGATGGAAAGAGAGAGTTGGAGAAGAAGAGAAGAGCTGTTGTAATAGGTGAAGGTGAAGAAAGGGAGGAGCTGAATGATGAAGGAGGAGGAGGTGGTGGTGGTGGTTCTCTTAATTTGAACCTTGGAGCTCAGGTTTACCCTATCATGGTGGAAGGGGATGAGAAAAGTGGGAAGAAGACAAAGGTAGTTGAGACAGCTGCTACAACTTCTAGCCGTGCAGTTTGTCAGGTACAAGATTGTAGGGCTGATCTTAGTGGTGCAAAGGATTATCACCGCCGGCATAAAGTTTGTGATGTGCATTCTAAGGCTACTAAGGCCCTTGTGGGAAATGTTATGCAGCGGTTTTGTCAACAGTGTAGCAGGTTTCATGCTCTTGAAGAATTTGATGAAGGGAAGCGGAGTTGTCGTAGGCGTCTAGCAGGCCATAATAGGAGGAGGAGGAAAACGCATCCTGATGCAGCTGGTGTTAATGGAGGTTCTCTGAATGGTGAAAGGGGTAGTAGCTATCTGTTGATGAGTTTGTTACGGATACTGTCCAATATGCATTCAAACGGGTCAGATAATACAAGGAACCAGGATATTCTCTCTCATCTACTGGGGAACCTGGCAAATTTGGCCGGTACACTTAATGAAAGAAGTATAGCCTCCTTGTTGGAGGGATCTCAAGGTTTGGTAAATTCTAGGGCACCTGAAGCTGCGCACAATGTGCCAAATTCAAATGGTCCTGAAGCCTCAAGGCCTTCTGGTTCTCCCATCAAGATGGGTAATGGCTCCATCCAGCAGGATCCTCCAAGGTCTATGGTACAGTGTGAGGCAGCACCTTCGAATGCTGCCACAGAAAAATGCATGCCTATAGGTCATGGTGGAGCAACAAATTTGAAACCTTCGGGAATTCAGCCCTCAAATGTACTTATATCGAGAGATAGCCAACCATCCCAATTAGTTGCGGCAGATATTAGTGTTGGAAGGGATCGCTTAAATAACATCGACCTGAATAATGTATATGATGATTCTCAGGATTGTGCTGAGAATCCTAAGAAGTCTTCTGTTCCTGTGGGAGAGGTTAGGTCTCTTGATCATCCTTTGTGGTTGCAATGTAACTCTCTCAAATCAAGTCCCCCACAGACTAGTATAAACTCAGATTCAAACTCCTCCCAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGTCTCGCACGGATCGAATAGTTTTCAAACTCTTTGGCAAGGATCCAAGTGATTTTCCCCATCTTCTCCGACCACAGATCCTCAATTGGTTATCCCAGAGTCCAACAGAGATTGAGAGCTATATAAGGCCAGGCTGTATCGTGTTGACAATATATCTCCGCCTCGATAAATCTGCATGGGAGCAGCTTTCATGTAACCTTGGATCCAGCTTGAGCAAGCTTGCTTCAAACGATTCTTTCTGGACAACAGGCTGGGTATATACAAGGGTGCAACAATCTGTAGCTTTTTTGTATAACGGCCAGGTTGTCTTAGATGTTCCCTTGCATCTTAGAAGCCCACAGAACTGTAGGATTTCATGCATTAAACCACTTGCGGTTCCCAAAAATGCAAGTGCTAAGTTTACTGTGAAAGGGTTCAACCTTTTCAGATCCAGCACAAGGTAA 1872 0.4476 MEARFGGKNQFLYGGVVQEMKGVGKRSLEWDLNDWRWDGDLFTAQQLNSVPSDCRSRQFFPPNPEIPANSNAISSSINPVEDGKRELEKKRRAVVIGEGEEREELNDEGGGGGGGGSLNLNLGAQVYPIMVEGDEKSGKKTKVVETAATTSSRAVCQVQDCRADLSGAKDYHRRHKVCDVHSKATKALVGNVMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNRRRRKTHPDAAGVNGGSLNGERGSSYLLMSLLRILSNMHSNGSDNTRNQDILSHLLGNLANLAGTLNERSIASLLEGSQGLVNSRAPEAAHNVPNSNGPEASRPSGSPIKMGNGSIQQDPPRSMVQCEAAPSNAATEKCMPIGHGGATNLKPSGIQPSNVLISRDSQPSQLVAADISVGRDRLNNIDLNNVYDDSQDCAENPKKSSVPVGEVRSLDHPLWLQCNSLKSSPPQTSINSDSNSSQSPSSSSGEAQSRTDRIVFKLFGKDPSDFPHLLRPQILNWLSQSPTEIESYIRPGCIVLTIYLRLDKSAWEQLSCNLGSSLSKLASNDSFWTTGWVYTRVQQSVAFLYNGQVVLDVPLHLRSPQNCRISCIKPLAVPKNASAKFTVKGFNLFRSSTR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60733g00005 623 FunFam Squamosa promoter-binding-like protein 14 147 217 - -
Stsc60733g00005 623 SUPERFAMILY SBT domain 154 234 IPR036893 GO:0003677|GO:0005634
Stsc60733g00005 623 MobiDBLite consensus disorder prediction 452 478 - -
Stsc60733g00005 623 MobiDBLite consensus disorder prediction 312 375 - -
Stsc60733g00005 623 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 74 622 IPR044817 GO:0003677
Stsc60733g00005 623 MobiDBLite consensus disorder prediction 64 84 - -
Stsc60733g00005 623 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Stsc60733g00005 623 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Stsc60733g00005 623 MobiDBLite consensus disorder prediction 313 346 - -
Stsc60733g00005 623 MobiDBLite consensus disorder prediction 64 78 - -
Stsc60733g00005 623 MobiDBLite consensus disorder prediction 220 242 - -
Stsc60733g00005 623 Pfam SBP domain 156 229 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60733g00005 Stsc-Chr60733 25946 29232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60733g00005 1 623 SBP-box Gene Family AT3G60030 46.667 2.18e-145 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc60733g00005 SBP 3.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60733g00005 - - gmx:100776125 812.757