Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60731g00008 ATGAGAGATGGTGATACTTTGGTTTCAGCTGGTGGAACTTTTGAACTTGGATTCTTTAGCCCCAGAGACTCAAGTGGTCGATACTTGGGAATATGGTACAAGCAATCTCCTTCAACACTAACATGGGTTGCCAACCGGAACAAACGAATCGACAGCAATGACTCAGTGTTAGAAATCAACAGCCAAGGAGTTCTTGTACTGCACAATGGCGCAAACAAGACATTCTGGTTCTCCAATGTTTCAAAAGCAGCAGAGAATCCAGTTGCAGAGCTCTTGGACTCAGGAAATCTTGTTGTGAGGGATGGAAGTGGTGGTAACATGGAGAATCTCTTATGGCAAAGTTTTGATTACCCTTGTGATACTTTGTTGCCGGGAATGAAGCTTGGATGGAATCTAGAGACAGGCCTAAATAGGTTCCTATCTTCTTGGAGAAGTACAGATGATCCTGATTCCGGAGACTACTCGTTTAGAATAGATCTTAGAGGTTATCCACAAGCAGTTCAAATGAAGGGAGCTTCTATAATGACCCGGGCAGGGTCATGGAATGGCCTTACCTTCACAGCACTTCCATATCATAAGCAAAGTCCAGTGTTTAAATCTGAATTTGTTCTGAATGAAAAGGAGATATTCTATGAGTTCCAAGTCCTTAACACTACTACTTTAGTTAGATTCGTGATGACCCCTTCAGGGAATCGGCAGCTTATCCATTGGACAAGTGAAACCAATGGCTGGGAGACTGTCATGACTATGCCATCAGTTCGGTGCGACAACTATGCGTTGTGTGGTGTGAATTCTGTTTGCAATTCAGTGAACACTCCAGATTGTGCTTGCCTGAAAGGATTTACACCAAAGGTTCCAAGAGAGTGGAATATGTCACATTGGTCTAATGGTTGTGTTAGGATCACTCAATTAGATTGTAGCAAAAATGAGTTCATGAAGTACACAGGCATTGTTCTTCCTGACACGTCTTCATCTAGGTATAATAAGACCATTGACCTTCAAGAATGTGAGAAGTTATGCCTGAAAAACTGTTCCTGCACAGCATATGCAAATTTGGATAAGCGCGACGGAGGAAGTGGCTGCTTGCTTTGGTTTGGTGATCTGATTGACATGAGGCAAGCATCTGAAGGTGGCCAAGATATTTATATTCGAGTTCCTTCTTCGGAGCTAGAACATAACAAGAAGAGTTACAAAAAGAAGATTGTAGGCATCATTACTGGCTCTGCTGTATTCTTGATGTGCTTAATACTTGGACTTGCCATATGTGTATGGAAATATAAATTTGACAAGCCAGGGGTGTTGAAAGTGGTTTTCTGGAGAGAACTATTATGCAGAAGGGTGGAGGAGGACAGTGATCTTCCAACATTTGATTTATCGACCATATTTTATGCTACAGATCGCTTTTCTAGCTACAACAAATTAGGAGAAGGTGGCTTTGGACCTGTGTACAAGGTATATAAATTTGGTTATGTACTTCTCAATATTGTATTCTTTGATCTTCGAAAATTATATGATACAAATAATAGTTATCAGGGTGTGCTTGACGATGGCACTGAGATCGCTGTAAAGAGGCTTTCCAAGAATTCTGAGCAAGGACAGCAAGAGTTCAAAACTGAAGTGCAGTTAATTGCTAAACTTCAGCATCGCAATCTTGTAAAGCTTCTCGGTTGTTGCATTAAACAAAAAGAGAAACTCTTGATTTACGAGTTCATGCCAAATAGAAGTTTGGACCACTTCATTTTTGGTTCATCTCTTAACCATCTCAAATTTATTGTTCAGGTTTTCAATACCCTCAGGTTGATGTCATGCTGA 1812 0.4078 MRDGDTLVSAGGTFELGFFSPRDSSGRYLGIWYKQSPSTLTWVANRNKRIDSNDSVLEINSQGVLVLHNGANKTFWFSNVSKAAENPVAELLDSGNLVVRDGSGGNMENLLWQSFDYPCDTLLPGMKLGWNLETGLNRFLSSWRSTDDPDSGDYSFRIDLRGYPQAVQMKGASIMTRAGSWNGLTFTALPYHKQSPVFKSEFVLNEKEIFYEFQVLNTTTLVRFVMTPSGNRQLIHWTSETNGWETVMTMPSVRCDNYALCGVNSVCNSVNTPDCACLKGFTPKVPREWNMSHWSNGCVRITQLDCSKNEFMKYTGIVLPDTSSSRYNKTIDLQECEKLCLKNCSCTAYANLDKRDGGSGCLLWFGDLIDMRQASEGGQDIYIRVPSSELEHNKKSYKKKIVGIITGSAVFLMCLILGLAICVWKYKFDKPGVLKVVFWRELLCRRVEEDSDLPTFDLSTIFYATDRFSSYNKLGEGGFGPVYKVYKFGYVLLNIVFFDLRKLYDTNNSYQGVLDDGTEIAVKRLSKNSEQGQQEFKTEVQLIAKLQHRNLVKLLGCCIKQKEKLLIYEFMPNRSLDHFIFGSSLNHLKFIVQVFNTLRLMSC 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60731g00008 603 Pfam S-locus glycoprotein domain 177 284 IPR000858 GO:0048544
Stsc60731g00008 603 Pfam PAN-like domain 306 371 IPR003609 -
Stsc60731g00008 603 Pfam Protein tyrosine and serine/threonine kinase 472 583 IPR001245 GO:0004672|GO:0006468
Stsc60731g00008 603 SMART blect_4 2 118 IPR001480 -
Stsc60731g00008 603 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 3 585 - -
Stsc60731g00008 603 SUPERFAMILY alpha-D-mannose-specific plant lectins 40 149 IPR036426 -
Stsc60731g00008 603 ProSiteProfiles Bulb-type lectin domain profile. 1 112 IPR001480 -
Stsc60731g00008 603 ProSiteProfiles PAN/Apple domain profile. 306 386 IPR003609 -
Stsc60731g00008 603 CDD B_lectin 3 118 IPR001480 -
Stsc60731g00008 603 Gene3D Phosphorylase Kinase; domain 1 440 492 - -
Stsc60731g00008 603 CDD PAN_AP_plant 302 386 - -
Stsc60731g00008 603 SMART ntp_6 306 385 IPR003609 -
Stsc60731g00008 603 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 305 385 - -
Stsc60731g00008 603 Gene3D Hepatocyte Growth Factor 302 383 - -
Stsc60731g00008 603 ProSiteProfiles Protein kinase domain profile. 468 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60731g00008 603 FunFam Uncharacterized protein 505 570 - -
Stsc60731g00008 603 Gene3D Phosphorylase Kinase; domain 1 498 570 - -
Stsc60731g00008 603 SUPERFAMILY Protein kinase-like (PK-like) 447 586 IPR011009 -
Stsc60731g00008 603 Pfam D-mannose binding lectin 39 144 IPR001480 -
Stsc60731g00008 603 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 115 - -
Stsc60731g00008 603 Gene3D - 1 115 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60731g00008 Stsc-Chr60731 17923 20000 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60731g00008 448 586 Receptor kinase-like Gene Family AT4G23130 46.528 4.77e-31 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60731g00008 PK_Tyr_Ser-Thr 5.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60731g00008 - - aip:107611884 655.21