Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60731g00005 ATGTCCCCTTTAACAGTTGTATGGGTCGCCAACAGAGAAACAGCACTCAATGATACCTCTGGAGTCTTAAAACTAACTGATCAAGGACTTGTTCTCCTTGTCAATGGCACCAGCAACAGCACTGTGTGGTCTTCCACACTATCAAGCAAAGCAGAGAATCCGGTTGCACAACTCGTGGTCTCAGGAAATCTTGTTGTGAAAGATGGCCATAATGGGGAGCACTTCTTGTGGCAAAGTTTTGATTTTCTTGGTGATACACTCTTGCCAGGAACAAAGATAGGATGGGATCCAGTGACAGGGCTAGAGAGAACTATGACATCTTCGAAAAGTGCTGATGATCCCGGTCATGGAGACTTCATATTTAGAATAGACCCTAGAGGCTATCCACAAGCTGTTCTAACAAATGGAACTGCCATAATGGTTAGAGTGGGACCTTGGAATGGACTAATGTTTTCAGGAGCTACAATTTACTTGCGGTATAGTAAATTGCTGCCATCTGATTATGATTTCATTGAAAAAGAGCTAATTTGTAAGCTCCAACCTTTACACACATATAGTTTTATTAGAAGTGTGGTGACTCCTTGGGGTGGTGTGCAGCTTCTGCATTGGTCAAGACAAACCAGTAGTTGGGAGACACTACTTTCTTTACCTGAAGGCGAATGTGACAAGTATTCGCACTGTGGTGCGAATTCTTTTTGTAGAGTCACTCCAGCTCCAATCTGCACATGCCTAGAAGGATTTGTTCCAAAATACCCAAGAAAATGGAAGGACTTGTATTGGTCTGATGGCTGTGTTAGGATCACTCCATTAAGTTGCAGCAAAGATGGTTTCAAGAAGCATTCAGGTTTGGTGTTGCCTGACACATCTAGCTCTTGGCATAACAAGACCATGAACCTTCAGGAATGTGAGGACTTGTGTAGGAAAAATTGTTCCTGTACGGCATATTCCAATATGGATGTCCGCCGCGGAGGAAGTGGTTGCTTACTTTGGTTTCATGATTTGATTGACATGAGACAAGGAGGACAAGACCTTTATATTCGACTTCCTATGTCAGAGCCAGATGATGAGTCAAACAAGAAAAAGCTTGTAGGCATGATTGCTGGCTCCATTTTATTCTTTATGAGCATGATGTTTGGACTGGTTCTATGTCTTTGGAGAAAGAAACTTGAGGAGCCAGAAATATTTTGGTGGAAGCAACGGGCTCACAAAAGGGAGAAGGATGACATGGATCTTCCAATGTTTGATTTATCAACCATAGTTTATGCCACTAATTACTTCTCTAGTGACAACAAATTGGGAGAAGGTGGATTTGGATCTGTATATAAGGGTGCACTTGAAAATGGGACAGAAATTGCTGTCAAGAGGCTTTCCATTGACTCTGAACAAGGACTGGATGAATTTAAAAATGAAGTTCAGCTAATTGCAAAACTTCAGCATCGCAACCTTGTAAAGCTTCTTGGTTGTTGCATTCAACAGAAAGAAAAACTCTTGATTTATGAGCTCATGCCCAATAGGAGTTTGGACACCTTTATTTTTGATGATTCTAGAAGAAAATTATTAGACTGGGCAAAGCGCTTTCAAATTATTGGCGGAACAGCTCGAGGCCTAGTTTATTTACATCAAGATTCTAGGCTAAGAGTCATTCATAGAGATCTAAAAACTAGCAATATTCTTCTTGATAAAGACATGAACGCGAAAATATCAGACTTTGGTCTTGCTAGGACATTTGCCGGAGATCAAACTGAGGCCAGAACAAAGAGAGTGATGGGAACATAG 1776 0.4127 MSPLTVVWVANRETALNDTSGVLKLTDQGLVLLVNGTSNSTVWSSTLSSKAENPVAQLVVSGNLVVKDGHNGEHFLWQSFDFLGDTLLPGTKIGWDPVTGLERTMTSSKSADDPGHGDFIFRIDPRGYPQAVLTNGTAIMVRVGPWNGLMFSGATIYLRYSKLLPSDYDFIEKELICKLQPLHTYSFIRSVVTPWGGVQLLHWSRQTSSWETLLSLPEGECDKYSHCGANSFCRVTPAPICTCLEGFVPKYPRKWKDLYWSDGCVRITPLSCSKDGFKKHSGLVLPDTSSSWHNKTMNLQECEDLCRKNCSCTAYSNMDVRRGGSGCLLWFHDLIDMRQGGQDLYIRLPMSEPDDESNKKKLVGMIAGSILFFMSMMFGLVLCLWRKKLEEPEIFWWKQRAHKREKDDMDLPMFDLSTIVYATNYFSSDNKLGEGGFGSVYKGALENGTEIAVKRLSIDSEQGLDEFKNEVQLIAKLQHRNLVKLLGCCIQQKEKLLIYELMPNRSLDTFIFDDSRRKLLDWAKRFQIIGGTARGLVYLHQDSRLRVIHRDLKTSNILLDKDMNAKISDFGLARTFAGDQTEARTKRVMGT 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60731g00005 591 SUPERFAMILY Protein kinase-like (PK-like) 410 591 IPR011009 -
Stsc60731g00005 591 SMART serkin_6 426 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60731g00005 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672|GO:0006468
Stsc60731g00005 591 ProSiteProfiles PAN/Apple domain profile. 272 349 IPR003609 -
Stsc60731g00005 591 Gene3D Transferase(Phosphotransferase) domain 1 502 591 - -
Stsc60731g00005 591 Gene3D - 2 81 IPR036426 -
Stsc60731g00005 591 Pfam Protein tyrosine and serine/threonine kinase 429 583 IPR001245 GO:0004672|GO:0006468
Stsc60731g00005 591 SMART ntp_6 272 348 IPR003609 -
Stsc60731g00005 591 CDD B_lectin 2 82 IPR001480 -
Stsc60731g00005 591 ProSitePatterns Protein kinases ATP-binding region signature. 432 454 IPR017441 GO:0005524
Stsc60731g00005 591 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 392 501 - -
Stsc60731g00005 591 SUPERFAMILY alpha-D-mannose-specific plant lectins 3 113 IPR036426 -
Stsc60731g00005 591 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 502 591 - -
Stsc60731g00005 591 ProSiteProfiles Bulb-type lectin domain profile. 1 79 IPR001480 -
Stsc60731g00005 591 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 5 585 - -
Stsc60731g00005 591 Pfam S-locus glycoprotein domain 142 250 IPR000858 GO:0048544
Stsc60731g00005 591 Gene3D Phosphorylase Kinase; domain 1 394 501 - -
Stsc60731g00005 591 Pfam D-mannose binding lectin 5 109 IPR001480 -
Stsc60731g00005 591 CDD PAN_AP_plant 268 349 - -
Stsc60731g00005 591 ProSiteProfiles Protein kinase domain profile. 426 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60731g00005 591 Gene3D Hepatocyte Growth Factor 270 345 - -
Stsc60731g00005 591 SMART blect_4 1 83 IPR001480 -
Stsc60731g00005 591 Pfam PAN-like domain 272 337 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60731g00005 Stsc-Chr60731 9302 12416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60731g00005 370 591 Receptor kinase-like Gene Family AT4G23190 53.778 6.05e-74 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60731g00005 PK_Tyr_Ser-Thr 1.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60731g00005 - - aip:107611884 858.981