Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60731g00002 ATGCCCAACAGGAGTTTGGACTACTTTATTTTTGATGATGCTAGAAGAAAATTGTTAGATTGGGCTAAGCGCTTTCACATTATCAGTGGCACAGCTCGAGGCCTAGTTTATCTGCATCAGGACTCCAGGCTAAGAGTCATTCATAGAGATCTAAAAGCTAGTAATATTCTTCTTGACAAAGACATGAATGCAAAAATATCAGACTTCGGCCTTGCTAGGACATTTGCATGCGATCAGACTGAAGACAAGACTAAAAGAGTGGTGGGAACTCATGGTTATATTTCGCCCGAGTATGCAGTGCGTGGCTCCTTTTCAATGAAATCAGATGTGTTCGCCTTTGGTGTAATCATGCTTGAGGTAGTCAGTGGGAGGAGGACTAGAGAGTTCTGTGTCCCAAACCAAAGTCTTAACCTTCTTGGATTTGCATGGGAGCTATGGAATGAGGAGAGGACTTTGGAGCTGGTAGATGAATCGCTGCGCGATTCGGTGAATGAAGCTGAAGCATTGAGATGCATTCATATAGGGCTGTTGTGTGTGCAAGAGAGACCAGAACATAGGCCAAACATGTCATCAGTAGTTCATATGTTGGATGATGATAAACCATTGCCTCGGCCAAGGTTGCCTGCATTTTATTCACACCAACAAGATTCTACACGGATTGATGGTGAAGATGGTGAGGAAGTTCATTCAGCAAATGAGGTTACCATATCATTGTTAGGGGCAAGGTAG 729 0.4348 MPNRSLDYFIFDDARRKLLDWAKRFHIISGTARGLVYLHQDSRLRVIHRDLKASNILLDKDMNAKISDFGLARTFACDQTEDKTKRVVGTHGYISPEYAVRGSFSMKSDVFAFGVIMLEVVSGRRTREFCVPNQSLNLLGFAWELWNEERTLELVDESLRDSVNEAEALRCIHIGLLCVQERPEHRPNMSSVVHMLDDDKPLPRPRLPAFYSHQQDSTRIDGEDGEEVHSANEVTISLLGAR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60731g00002 242 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 203 - -
Stsc60731g00002 242 Pfam Protein tyrosine and serine/threonine kinase 6 196 IPR001245 GO:0004672|GO:0006468
Stsc60731g00002 242 SMART serkin_6 4 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60731g00002 242 Gene3D Transferase(Phosphotransferase) domain 1 1 202 - -
Stsc60731g00002 242 ProSiteProfiles Protein kinase domain profile. 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60731g00002 242 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 237 - -
Stsc60731g00002 242 SUPERFAMILY Protein kinase-like (PK-like) 1 213 IPR011009 -
Stsc60731g00002 242 ProSitePatterns Serine/Threonine protein kinases active-site signature. 46 58 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60731g00002 Stsc-Chr60731 3791 4944 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60731g00002 3 238 Receptor kinase-like Gene Family AT4G23150 51.899 8.47e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60731g00002 PK_Tyr_Ser-Thr 4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60731g00002 - - aip:107611884 452.21