Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc60727g00005 | ATGTCTCGCACGTGCTCACAGTGTGGAAACAACGGCCACAACTCCCGCACATGCATCGATGCTTCACTCCCCGCCGCGCCGGTTTCCGGCGACGGATCTCCTCCCAGAGAGAACGCCATCATGCTGTTCGGCGTAAGACTCACCACCGCCGCCGAAGGAAGCTCATCATCATCTTCCTTCAGGAAAAGTGCTAGTATGGGTAATTTGTCCCAGTTTGATCAAATTCCACCGCAGGATCCAACCGTTGCTGACGCCGGCTATGTCTCGGACGACGTCGTTCACGCCTCCGGCCACAGCCGCGAGCGCAAACGAGGTGTTCCTTGGACTGAGGAGGAGCACAAGTTGTTCTTATTGGGTTTACATAAGGTTGGAAAAGGTGACTGGAGAGGAATTTCTAGAAATTTCGTGAAGACTCGGACACCTACTCAGGTTGCTAGTCACGCTCAGAAGTACTTCCTCCGCCGCCACAATCAGAACCGCCGCCGCCGGAGATCTAGTCTTTTTGATATTACCACCGATACGGTGATGGAATCCTCTCCCGTAATGGAAGAGCAAGTTCATCAAGAAGCGGCGGCGCCGCCCACGCCCACGCCCCCAGCGTATCCTCCATCACACTACAGCAGCTTCCCGGGTTCAGCTTTTCCGATGGCTTTATCTCCGGTGATGTTGCCGGTAGCTGCCGGTGGCGAGAGAGCATCAAAACCAATAAGGCCAACGCCGATTTTGCCCGTGCCACCATCTTCTAAGATGGCTAATTTGAACCTGAAGGAGAGAACAACTCCTAATACAGAATTTCGGCCTCCATCATTTGTTCTTAACTTAGCCCCGCCGCGGTTTGGCGATCAGTCCCCGGAGGAGAACAGTGGCCACTCCTCACCCTCGTCGCCGTCATCCACGGCATCTTTTCAAGCAGGGAATTTCAATGGTGGTGGAGATAGCATAATTAGTGTTGCTTAA | 957 | 0.5381 | MSRTCSQCGNNGHNSRTCIDASLPAAPVSGDGSPPRENAIMLFGVRLTTAAEGSSSSSSFRKSASMGNLSQFDQIPPQDPTVADAGYVSDDVVHASGHSRERKRGVPWTEEEHKLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSPVMEEQVHQEAAAPPTPTPPAYPPSHYSSFPGSAFPMALSPVMLPVAAGGERASKPIRPTPILPVPPSSKMANLNLKERTTPNTEFRPPSFVLNLAPPRFGDQSPEENSGHSSPSSPSSTASFQAGNFNGGGDSIISVA | 318 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc60727g00005 | 318 | Pfam | Myb-like DNA-binding domain | 107 | 152 | IPR001005 | - | |
| Stsc60727g00005 | 318 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 103 | 154 | IPR006447 | GO:0003677 | |
| Stsc60727g00005 | 318 | MobiDBLite | consensus disorder prediction | 252 | 267 | - | - | |
| Stsc60727g00005 | 318 | ProSiteProfiles | Myb-like domain profile. | 100 | 152 | IPR001005 | - | |
| Stsc60727g00005 | 318 | Gene3D | - | 106 | 157 | - | - | |
| Stsc60727g00005 | 318 | MobiDBLite | consensus disorder prediction | 181 | 204 | - | - | |
| Stsc60727g00005 | 318 | PANTHER | TRANSCRIPTION FACTOR KUA1 | 1 | 253 | - | - | |
| Stsc60727g00005 | 318 | ProSiteProfiles | SANT domain profile. | 103 | 156 | IPR017884 | - | |
| Stsc60727g00005 | 318 | MobiDBLite | consensus disorder prediction | 231 | 318 | - | - | |
| Stsc60727g00005 | 318 | CDD | SANT | 107 | 152 | IPR001005 | - | |
| Stsc60727g00005 | 318 | MobiDBLite | consensus disorder prediction | 284 | 310 | - | - | |
| Stsc60727g00005 | 318 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 100 | 156 | IPR017930 | - | |
| Stsc60727g00005 | 318 | FunFam | transcription factor MYB1R1 | 106 | 157 | - | - | |
| Stsc60727g00005 | 318 | ProSiteProfiles | Zinc finger CCHC-type profile. | 5 | 18 | IPR001878 | GO:0003676|GO:0008270 | |
| Stsc60727g00005 | 318 | SMART | sant | 104 | 154 | IPR001005 | - | |
| Stsc60727g00005 | 318 | SUPERFAMILY | Homeodomain-like | 102 | 155 | IPR009057 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc60727g00005 | Stsc-Chr60727 | 26633 | 28975 | Dispersed/Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Stsc60727g00005 | Myb_DNA-binding | 1.1e-11 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc60727g00005 | - | - | var:108322503 | 358.992 |