Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60726g00005 ATGGAAAAAGAAGGAGAAGCGAGTAAAGAGCAAGTTGGAAGGCCTCGGGCTGCAGCTGCAGCTCCGCCACAGTATAAATGCCCGCGGTGTGATTCAGAGAACACCAAGTTCTGCTATTACAACAACTACAGCCTGTCACAGCCTAGATACTTGTGCAAAACATGTAAGAGGTACTGGACACAAGGTGGAACCCTCAGGAACATACCTCTTGGTTCTTCCAAGAACAAGAACAAGCACAACAAGCGTACCTTCAACACCACTTCTTCTTCCTCCTCCTCCAGTAACAATCAAAAGCCTCAACCCTATTATCATCATCATGCTGCTGCTGCTGCTTCTGTTGGTGGTTCTACTACTATTACTTGTTCGTTTCTTGGGGAGGCATTATTACCATCATCATCATCATCAGTAGTAGTACAACAAAATGGTTTCATGATTCCATTATCATCATCAGCATCAGGGAGCAGCATGGGTGAATATACAACTACTGCTGCTGCTTCTCATCATCAATGGGCCTCTCATGCCAATTACTCTTTCTGGAGTACCACTGTCAGCACCACTTCTTCTTCCATAAGCGCTAATAACACCAACAATATCATGCCAAGGGTTGACGCACCTTCATCACCTTCTTCTTCTTCTTTCGTCACACCGAATCAGTGGCTACATCTCAAACGGAACTACCCAATGCCTCCTCCATGA 696 0.454 MEKEGEASKEQVGRPRAAAAAPPQYKCPRCDSENTKFCYYNNYSLSQPRYLCKTCKRYWTQGGTLRNIPLGSSKNKNKHNKRTFNTTSSSSSSSNNQKPQPYYHHHAAAAASVGGSTTITCSFLGEALLPSSSSSVVVQQNGFMIPLSSSASGSSMGEYTTTAAASHHQWASHANYSFWSTTVSTTSSSISANNTNNIMPRVDAPSSPSSSSFVTPNQWLHLKRNYPMPPP 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60726g00005 231 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Stsc60726g00005 231 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Stsc60726g00005 231 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 188 IPR045174 GO:0003700|GO:0006355
Stsc60726g00005 231 MobiDBLite consensus disorder prediction 1 25 - -
Stsc60726g00005 231 Pfam Dof domain, zinc finger 24 79 IPR003851 GO:0003677|GO:0006355
Stsc60726g00005 231 MobiDBLite consensus disorder prediction 66 101 - -
Stsc60726g00005 231 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60726g00005 Stsc-Chr60726 33793 34488 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60726g00005 22 178 C2C2-Dof Transcription Factor Family AT5G60200 44.311 3.74e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc60726g00005 zf-Dof 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60726g00005 - - aip:107634681 222.246