Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60726g00004 ATGATACATCATCACAACAAAAGCAAAGCAGCTTCTTCTTCTTCTTGTTCTTCTTCCCCCATGGCTACATCATCATCCTCTGCTAGTGCTAGGGTTATGGAAAAACCAGGTCAAGAACTTCTCCAGCAGCAACAACAAGCTCTCAAGTGCCCTCGCTGCGATTCATCAAACACAAAATTCTGCTACTACAACAACTACAGCTTATCTCAGCCCAGACACTTCTGCAAAGCCTGCAAGCGGTACTGGACAAGAGGCGGCACCCTCCGCAACGTTCCCGTTGGCGGTGGCTGCAGAAAAACCACCAAGCGTCTCAAGCGCCCACAACAACAACCTCCTCCTTCTTCTTCTTCTTCCATTGATCCCACCACTACTACTCCTTCTTCCTCTTCCACTCCTCCTCCTCCTCCAACTTCAACTATCAACCCTTTGTTTTATGGGGTACCTGCTAATAACAACAACAATAACTCCTGTGATGCGTTGAACCTACCTTCTTTCCCTGGCTTCAATAATAATAATAATCATCTAAGTGCTCTTACTGGCTTAGGTTTTTCATCCTCAGGGATCATGTCCAATATTGAAGCTACTGGATTTGGTTCAAACAATAATAATAACTCATTTCTTTCTGCTTACAATTCCATCTTTGGTTCCTGTTCTTCAGCTTCTACTCCACCGGTTATGGCTTCCCTGCTGAGTTCCACTCTACTGCAACATAAATTCATGAATAATAATGGTGGTGGTGGATTCCAAGGGTTAGGTAGTACTCCTGAGAGCGGTGAGGGAGAAAGAGGAGGAGGAGGAGTGATGGGTTGTTGTTCTTCGAAAGAAGTGAAAGGTGAATTATTATTGGGGCAAGAGAGAGAAAGAGAAAGAGAAGAGAGGTTGGAGTGGCAGAACCAGATGATGGAACATACTCATACAGTTGGCTTTTCTGATCCCTCTTCTTCGCTTTATTGGAGCACACCATCATCAGCCATGGCTTCTTCTTCTTGGAATGATCAACCCAATATTGGTCCTTCACTCACTTCACTCATCTAG 1035 0.4473 MIHHHNKSKAASSSSCSSSPMATSSSSASARVMEKPGQELLQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKTTKRLKRPQQQPPPSSSSSIDPTTTTPSSSSTPPPPPTSTINPLFYGVPANNNNNNSCDALNLPSFPGFNNNNNHLSALTGLGFSSSGIMSNIEATGFGSNNNNNSFLSAYNSIFGSCSSASTPPVMASLLSSTLLQHKFMNNNGGGGFQGLGSTPESGEGERGGGGVMGCCSSKEVKGELLLGQEREREREERLEWQNQMMEHTHTVGFSDPSSSLYWSTPSSAMASSSWNDQPNIGPSLTSLI 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60726g00004 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 211 IPR045174 GO:0003700|GO:0006355
Stsc60726g00004 344 MobiDBLite consensus disorder prediction 322 344 - -
Stsc60726g00004 344 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Stsc60726g00004 344 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Stsc60726g00004 344 MobiDBLite consensus disorder prediction 1 34 - -
Stsc60726g00004 344 MobiDBLite consensus disorder prediction 92 145 - -
Stsc60726g00004 344 MobiDBLite consensus disorder prediction 127 141 - -
Stsc60726g00004 344 MobiDBLite consensus disorder prediction 7 34 - -
Stsc60726g00004 344 MobiDBLite consensus disorder prediction 106 126 - -
Stsc60726g00004 344 Pfam Dof domain, zinc finger 46 102 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60726g00004 Stsc-Chr60726 21224 23826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60726g00004 34 205 C2C2-Dof Transcription Factor Family AT5G65590 46.893 1.81e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc60726g00004 zf-Dof 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60726g00004 - - ahf:112791485 360.533