Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60726g00003 ATGTTGGTTAATATCATGCCTCCATCAACGAGTAACGAATGGACACAGACTCATCAAATGATACATCATCACAACAAAAGCAAAGCAGCTTCTTCTTCTTCTTGTTCTTCTTCCCCCATGGCTACATCATCATCCTCTGCTAGTGCTAGGGTTATGGAAAAACCAGGTCAAGAACTTCTCCAGCAGCAACAACAAGCTCTCAAGTGCCCTCGCTGCGATTCATCAAACACAAAATTCTGCTACTACAACAACTACAGCTTATCTCAGCCCAGACACTTCTGCAAAGCCTGCAAGCGGTACTGGACAAGAGGCGGCACCCTCCGCAACGTTCCCGTTGGCGGTGGCTGCAGAAAAACCACCAAGCGTCTCAAGCGCCCACAACAACAACCTCCTCCTTCTTCTTCTTCTTCCATTGATCCCACCACTACTACTCCTTCTTCCTCTTCCACTCCTCCTCCTCCTCCAACTTCAACTATCAACCCTTTGTTTTATGGGGTACCTGCTAATAACAACAACAATAACTCCTGTGATGCGTTGAACCTACCTTCTTTCCCTGGCTTCAATAATAATAATAATCATCTAAGTGCTCTTACTGGCTTAGGTTTTTCATCCTCAGGGATCATGTCCAATATTGAAGCTACTGGATTTGGTTCAAACAATAATAATAACTCATTTCTTTCTGCTTACAATTCCATCTTTGGTTCCTGTTCTTCAGCTTCTACTCCACCGGTTATGGCTTCCCTGCTGAGTTCCACTCTACTGCAACATAAATTCATGAATAATAATGGTGGTGGTGGATTCCAAGGGTTAGGTAGTACTCCTGAGAGCGGTGAGGGAGAAAGAGGAGGAGGAGGAGTGATGGGTTGTTGTTCTTCGAAAGAAGTGAAAGGTGAATTATTATTGGGGCAAGAGAGAGAAAGAGAAAGAGAAGAGAGGTTGGAGTGGCAGAACCAGATGATGGAACATACTCATACAGTTGGCTTTTCTGATCCCTCTTCTTCGCTTTATTGGAGCACACCATCATCAGCCATGGCTTCTTCTTCTTGGAATGATCAACCCAATATTGGTCCTTCACTCACTTCACTCATCTAG 1092 0.4451 MLVNIMPPSTSNEWTQTHQMIHHHNKSKAASSSSCSSSPMATSSSSASARVMEKPGQELLQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKTTKRLKRPQQQPPPSSSSSIDPTTTTPSSSSTPPPPPTSTINPLFYGVPANNNNNNSCDALNLPSFPGFNNNNNHLSALTGLGFSSSGIMSNIEATGFGSNNNNNSFLSAYNSIFGSCSSASTPPVMASLLSSTLLQHKFMNNNGGGGFQGLGSTPESGEGERGGGGVMGCCSSKEVKGELLLGQEREREREERLEWQNQMMEHTHTVGFSDPSSSLYWSTPSSAMASSSWNDQPNIGPSLTSLI 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60726g00003 363 MobiDBLite consensus disorder prediction 1 53 - -
Stsc60726g00003 363 MobiDBLite consensus disorder prediction 108 164 - -
Stsc60726g00003 363 MobiDBLite consensus disorder prediction 146 160 - -
Stsc60726g00003 363 Pfam Dof domain, zinc finger 65 121 IPR003851 GO:0003677|GO:0006355
Stsc60726g00003 363 MobiDBLite consensus disorder prediction 26 53 - -
Stsc60726g00003 363 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 46 230 IPR045174 GO:0003700|GO:0006355
Stsc60726g00003 363 ProSiteProfiles Zinc finger Dof-type profile. 67 121 IPR003851 GO:0003677|GO:0006355
Stsc60726g00003 363 MobiDBLite consensus disorder prediction 341 363 - -
Stsc60726g00003 363 MobiDBLite consensus disorder prediction 1 18 - -
Stsc60726g00003 363 MobiDBLite consensus disorder prediction 125 145 - -
Stsc60726g00003 363 ProSitePatterns Zinc finger Dof-type signature. 69 105 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60726g00003 Stsc-Chr60726 21224 23826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60726g00003 53 224 C2C2-Dof Transcription Factor Family AT5G65590 46.893 2.16e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc60726g00003 zf-Dof 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60726g00003 - - ahf:112791485 385.571