Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60726g00002 ATGGACACTAGAAGGTCTGAAGTAGGGAAGAGAACCTTGTTGAGGTACAAGGAAGAGGAGGAGGAAGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAAGAGGAAGAAGAGATGGTGGGTTATGGAGAAGAATATGGTGGGAGGAGGAAGAGGGCAATGACAGATCTCATGAGCAGCAAGAAAGGCTTCAAAGGTGGAGGAAGCTCTTCAAATATGCCACCGTCCTGTCAGGTGGACGGCTGTGACTCTGATCTGAGCGAGGCCAAGCAGTACCATAGAAGACACAAGGTTTGTGAGTTCCATGCCAAGGCTCCTTCCGTACACATTTCTGGCCAACAACAAAGGTTCTGCCAACAATGCAGCAGATTCCATGAGCTCTCGGAGTTTGATGACTCGAAAAGGAGCTGCAGGAGGCGTCTGGCTGGGCATAATGAGAGGCGTCGCAAAAATAATGCAACTGAGAACCATGGAGAACAATGA 480 0.5 MDTRRSEVGKRTLLRYKEEEEEEEEEEEEEEEEEEEEMVGYGEEYGGRRKRAMTDLMSSKKGFKGGGSSSNMPPSCQVDGCDSDLSEAKQYHRRHKVCEFHAKAPSVHISGQQQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNNATENHGEQ 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60726g00002 159 Coils Coil 9 44 - -
Stsc60726g00002 159 PIRSF SBP 4 159 IPR017238 GO:0003677|GO:0003700|GO:0009908
Stsc60726g00002 159 MobiDBLite consensus disorder prediction 1 49 - -
Stsc60726g00002 159 SUPERFAMILY SBT domain 74 152 IPR036893 GO:0003677|GO:0005634
Stsc60726g00002 159 FunFam Squamosa promoter-binding-like protein 14 67 137 - -
Stsc60726g00002 159 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 47 151 IPR044817 GO:0003677
Stsc60726g00002 159 Pfam SBP domain 76 149 IPR004333 GO:0003677
Stsc60726g00002 159 MobiDBLite consensus disorder prediction 19 40 - -
Stsc60726g00002 159 ProSiteProfiles Zinc finger SBP-type profile. 73 150 IPR004333 GO:0003677
Stsc60726g00002 159 MobiDBLite consensus disorder prediction 129 159 - -
Stsc60726g00002 159 MobiDBLite consensus disorder prediction 1 18 - -
Stsc60726g00002 159 Gene3D - 66 137 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60726g00002 Stsc-Chr60726 8920 10591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60726g00002 64 151 SBP-box Gene Family AT2G33810 69.318 3.50e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc60726g00002 SBP 1.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60726g00002 - - adu:127745653 210.305