Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60724g00001 ATGGCAGCTGGGAGAGTTGGTGTTTTGAAGAGGAGGGAATCTTGTAAATATGGTTCCATTAAGGAATCTGACTCTTACTGTTCTAAGGATGGTTCTTCTATGGTGGAAGCTTCACCTGCCTCAAGTTCTCATGGTGGTGAAGCTTTGCTTCGTGCTGAAAAGAGGAGGAAAGTTTCTCCCAGTGCATGGGACATGGGAGAGAATGAAGTGAGAGTATCTTCGAAGAACAGGGTCACCCACGTTGTTGGTCTGCCTCCTACTACTCCATCTCCAGCTGATCCGCCTCTTGTGCTTCCGGGTGAACAGTCAGGTGATTTTGACAAAGATGCAGATTGCTTTGAGGATAACAAGGTGCAGGGATGGAACATTGCAATGTCGAGGTGGGCTTCTGCTGATTTTTCGCCAGAGGATGCATGTTATGATGAGGACAAGGATGGCAAAGTGAGTTTAACTACTGAAAGTGGTGAGATCCTAGAAGTAAGCTCGGGAGGGAAAGTTAGTAGATCAACTGGGAGTAGTAGAAGAGGTGATTTGGGCCTTTCTTCTGATGGTACTGACTCTGAAGAGGATATTACTGTTGATTCCATTGAGGAGGAGGATGATGAACAAGGTGAAACTGCTTATGTTTCTTCGTCAGATTCTGATGTGAATCTTGGAGGTTCTGGGCAGGTGCAGAGGAATATAAGCATGCTCAACAGCTGCAGAAGCGTGTATGAGTTTGAAATGATTAAGAAGATAAATGAAGGAACTTATGGTGTTGTCTACAAAGCTAAGGATAAGAAGACAGGGGAAATAATTGCGTTGAAGAAGGTGAAGATGAACTTAGATAAGGAAGGCTTTCCTTTGACATCCTTGAGGGAAATGAACATTCTTTTGTCGTTTAACCACCCCTCCATTGTGGATGTTAAAGAAGTAGTAGTAGATGATTTTGACTGTGTTTTTATGGGTGTTGACTATCTTCATGATAATTGGGTTCTTCACAGAGATTTAAAGACGTCAAACATTCTGCTGAACAACAAAGGGGAATTGAAAATATGTGATTTTGGATTGTCTCGCCAGTATGGGAGCCCGCTGAAGCCATATACGCCTCTTGTGGTTACTCTACGTTACAGAGCACCTGAGCTTTTGTTAGGTACTAAAGAATACTCCACAGCCATCGATATGTGGTCTGTGGGTTGCATAATGGCTGAATTAGTTACCAGAGAGACACTCTTCAAGGGTAAAAATGAAGTTGAACAAGTTGATCAGATTTTTCGAACTTTGGGGACCCCAGATGAGAATATTTGGCCCGGAATATCGAAATTGCCTGGGTCTAAAGCAAAATTTGTGAAGCAACCGTATAACATGCTCCGGAAGAAGTTTCCAGTCGCATCCTTTACTGGTCAGCCAGTTCTATCTGAGTCAGGATTTGACTTGTTGAGCAGGCTTCTAACTTATGACCCTGAAAAGAGGATTACAGCTAAAGATGCTCTCCTTCATGATTGGTTCCATGAAGCCCCTCTTCCTAATTCTGATTTCAAGCCTATTTCCCCTTTTCATTGCTAG 1545 0.4311 MAAGRVGVLKRRESCKYGSIKESDSYCSKDGSSMVEASPASSSHGGEALLRAEKRRKVSPSAWDMGENEVRVSSKNRVTHVVGLPPTTPSPADPPLVLPGEQSGDFDKDADCFEDNKVQGWNIAMSRWASADFSPEDACYDEDKDGKVSLTTESGEILEVSSGGKVSRSTGSSRRGDLGLSSDGTDSEEDITVDSIEEEDDEQGETAYVSSSDSDVNLGGSGQVQRNISMLNSCRSVYEFEMIKKINEGTYGVVYKAKDKKTGEIIALKKVKMNLDKEGFPLTSLREMNILLSFNHPSIVDVKEVVVDDFDCVFMGVDYLHDNWVLHRDLKTSNILLNNKGELKICDFGLSRQYGSPLKPYTPLVVTLRYRAPELLLGTKEYSTAIDMWSVGCIMAELVTRETLFKGKNEVEQVDQIFRTLGTPDENIWPGISKLPGSKAKFVKQPYNMLRKKFPVASFTGQPVLSESGFDLLSRLLTYDPEKRITAKDALLHDWFHEAPLPNSDFKPISPFHC 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60724g00001 514 Pfam Protein kinase domain 312 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60724g00001 514 Pfam Protein kinase domain 240 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60724g00001 514 SMART serkin_6 240 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60724g00001 514 MobiDBLite consensus disorder prediction 159 180 - -
Stsc60724g00001 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 325 337 IPR008271 GO:0004672|GO:0006468
Stsc60724g00001 514 MobiDBLite consensus disorder prediction 159 203 - -
Stsc60724g00001 514 MobiDBLite consensus disorder prediction 183 203 - -
Stsc60724g00001 514 SUPERFAMILY Protein kinase-like (PK-like) 234 502 IPR011009 -
Stsc60724g00001 514 Gene3D Phosphorylase Kinase; domain 1 220 308 - -
Stsc60724g00001 514 PANTHER CELL DIVISION PROTEIN KINASE 239 310 - -
Stsc60724g00001 514 Gene3D Transferase(Phosphotransferase) domain 1 309 506 - -
Stsc60724g00001 514 MobiDBLite consensus disorder prediction 48 62 - -
Stsc60724g00001 514 ProSiteProfiles Protein kinase domain profile. 240 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60724g00001 514 MobiDBLite consensus disorder prediction 25 40 - -
Stsc60724g00001 514 MobiDBLite consensus disorder prediction 22 67 - -
Stsc60724g00001 514 FunFam Cyclin-dependent kinase G-2 296 513 - -
Stsc60724g00001 514 FunFam cyclin-dependent kinase G-2 isoform X1 225 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60724g00001 Stsc-Chr60724 4254 6425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60724g00001 239 496 Core Cell Cycle Gene Families AT3G48750 41.297 3.04e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Stsc60724g00001 Pkinase 6.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60724g00001 K08818 - gmx:100788840 562.762