Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60721g00005 ATGGCTTCCCGGGAAAGCACTAACTGGCTTTTCGATTATGCTTTGATTGACGATATTCCTGTCCACGACGCAACTTTCGCTGCTCCTTCCTCCGGTTTCAATTGGCCTACGAACGCCATCAATGGTTCTTCAAATGTCGGTGTTGAAATTGATGGCTCGTTGGGTGATTCTGATGGTATCAAAGAATCTGGTTCAAAGAAGAGGGGCAGATCTGAGTCATGTGCTCCTTCTAGCTCGAAGGCATGTAGGGAGAAATTGCGGAGGGATAGGCTTAATGACAAGTTTGTTGAATTAGGCTCCATTTTGGAGCCTGGAAGACCTCCCAAAACAGACAAGGCTGCTATTCTGATTGATGCTGTCAGAATGGTGACACAATTGCGGGGTGAAGCCCAGAAGTTGAAAGACTCGAATATGGGTCTACAAGAAAAGATTAAAGAGCTGAAGGCTGAGAAGAATGAGCTTCGGGACGAGAAGCAGAGACTCAAGGCAGAGAAAGAAAAGTTGGAGCAGCAGCTGAAATCTATGAACGTACAACCTAGTTTCATGCCTTCTCCTGCTGCGATCCCCGCTGCATTTGCTCCTCAAGGTCAAGCCCCCGGCAACAAGCTCGTACCGATCATCAGCTATCCAGGAGTTGCAATGTGGCAATTCATGCCACCTGCTGCGGTCGATACATCCCAGGATCATGTACTCCGCCCGCCGGTTGCCTAA 711 0.4866 MASRESTNWLFDYALIDDIPVHDATFAAPSSGFNWPTNAINGSSNVGVEIDGSLGDSDGIKESGSKKRGRSESCAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNMGLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKSMNVQPSFMPSPAAIPAAFAPQGQAPGNKLVPIISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60721g00005 236 MobiDBLite consensus disorder prediction 51 83 - -
Stsc60721g00005 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 145 IPR036638 GO:0046983
Stsc60721g00005 236 SMART finulus 81 132 IPR011598 GO:0046983
Stsc60721g00005 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Stsc60721g00005 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Stsc60721g00005 236 Gene3D - 78 155 IPR036638 GO:0046983
Stsc60721g00005 236 CDD bHLH_AtILR3_like 80 155 - -
Stsc60721g00005 236 Coils Coil 123 178 - -
Stsc60721g00005 236 FunFam Transcription factor bHLH34 66 124 - -
Stsc60721g00005 236 PANTHER BHLH TRANSCRIPTION FACTOR 5 236 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60721g00005 Stsc-Chr60721 28212 31559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60721g00005 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 71.967 6.78e-116 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60721g00005 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60721g00005 - - gmx:100788858 381.333