Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60718g00008 ATGGCCATCTTTGCATTGTTGTTGGTACTGTTACTCCAATTGTCAACAATTTTTGGCTCAGCAGTTACCTTGAGACCAAAGGATTGTGGTACTGATTGGGTAGCTCATTCATATTCTAGTGATGGTGAAGAACTGTTTTACATAAATGGGAATGTAGTAAACAAAGTTGCTTTCTGTGAGGCACTCCAATTGTACATTGCAAACGGTTGTGAATTGAAGGACTACTTTGGGAGTAACAACTGTGCAATAGATGCCTCCTTTGTTAACTTGCCTTCGACAGCAGGAAGGAAACTTCTGCAGAAAGATTCGAGCAGTGAATCTGAATCACAAGGGGTTTCTCCCAAAGTTGGCCTTTTTGCGGGTGGAGCATTGTTGGTATGTTGTGCTGTTCTTTGTCCATGTATTTATGGGAAGAAGCGAAAAGCAACTGCTCATGCTGTTTTGACCAAGGATCCAAATTCAATATTGGACTCTGCTTCCTCCTTCGAAGCAAATTCTGTAACGGAAAAGGTCCAAGTACCAGCCAGTCCACTTCGAGTGCCACCTAGTCCTTCAAGATTCTCAACGTCTCCAAAACTCAAAAGAATTGAATCATTGCATCTCAACCTCAATCAGATTGCAAGAGCTACCCGTAACTTCTCAGAAACATTGCAGATAGGAGAAGGAGGTTTTGGAACTGTCTACAAGGCTCAGTTAGAAGATGNNNNNNNNNNTGTCGTGGCTGTAAAACGCGCAAAAAGAGAACATTTTGAGAGCTTGAGAACTGAATTCAGCAGTGAAGTTGAACTTCTGGCTAAAATTGATCATCGAAACCTTGTGAAGCTACTGGGTTATATTGAAAAAGGACATGAACGCCTTCTTATTACAGAGTATGTGCCGAATGGTACTCTACGGGAACACCTAGACGGTCAGCGTGGAAAAATCCTAGACTTCAATCAGCGTCTAGAAATTGCTATTGATGTTGCTCATGGCTTGACCTATTTGCATCTGTATGCAGAGAAGCCAATTATCCATCGAGATGTGAAGTCATCCAACATTCTTCTGACAGAAAGCATGCGAGCTAAAGTTGCTGATTTTGGATTTGCAAGGATTGGCCCTATGAACTCTGATCAAACACACATTTCTACCAAAGTGAAGGGAACAGTTGGTTATTTGGATCCTGAGTATATGAAAACATACCAACTCACTACCAAGAGTGATGTTTACTCATTTGGAATTTTGCTTTTAGAAATTTTAACAGGCCGTCGTCCTGTGGAGTTGAAGAAAACTGTTGAAGAGAGGGTTACGCTCAGATGGGCTTTCAGGAAGTTCAATGAAGGAAGGGTGGTGGAGCTGGTGGATCCGTTAATGGAAGAAACTGTAAACTCTGATGTTCTGATGAAGATGTTTGATTTGGCATTTCAGTGTGCAGCACCCGTCCGGGCAGATAGGCTTGACATGAAAGCAGTGGGAGAGCAATTGTGGTCAATTAGGGCAGATTACTTTAAGAATTCAAGAAGTAATTAG 1506 0.417 MAIFALLLVLLLQLSTIFGSAVTLRPKDCGTDWVAHSYSSDGEELFYINGNVVNKVAFCEALQLYIANGCELKDYFGSNNCAIDASFVNLPSTAGRKLLQKDSSSESESQGVSPKVGLFAGGALLVCCAVLCPCIYGKKRKATAHAVLTKDPNSILDSASSFEANSVTEKVQVPASPLRVPPSPSRFSTSPKLKRIESLHLNLNQIARATRNFSETLQIGEGGFGTVYKAQLEDXXXXVVAVKRAKREHFESLRTEFSSEVELLAKIDHRNLVKLLGYIEKGHERLLITEYVPNGTLREHLDGQRGKILDFNQRLEIAIDVAHGLTYLHLYAEKPIIHRDVKSSNILLTESMRAKVADFGFARIGPMNSDQTHISTKVKGTVGYLDPEYMKTYQLTTKSDVYSFGILLLEILTGRRPVELKKTVEERVTLRWAFRKFNEGRVVELVDPLMEETVNSDVLMKMFDLAFQCAAPVRADRLDMKAVGEQLWSIRADYFKNSRSN 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60718g00008 501 ProSitePatterns Protein kinases ATP-binding region signature. 219 243 IPR017441 GO:0005524
Stsc60718g00008 501 ProSiteProfiles Protein kinase domain profile. 213 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60718g00008 501 Gene3D Phosphorylase Kinase; domain 1 184 291 - -
Stsc60718g00008 501 SUPERFAMILY Protein kinase-like (PK-like) 197 490 IPR011009 -
Stsc60718g00008 501 Pfam Protein tyrosine and serine/threonine kinase 218 486 IPR001245 GO:0004672|GO:0006468
Stsc60718g00008 501 SMART serkin_6 213 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60718g00008 501 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 90 492 - -
Stsc60718g00008 501 CDD STKc_IRAK 219 487 - -
Stsc60718g00008 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 336 348 IPR008271 GO:0004672|GO:0006468
Stsc60718g00008 501 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 292 501 - -
Stsc60718g00008 501 Gene3D Transferase(Phosphotransferase) domain 1 292 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60718g00008 Stsc-Chr60718 41601 45022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60718g00008 198 490 Receptor kinase-like Gene Family AT5G59700 44.710 9.60e-72 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Stsc60718g00008 PK_Tyr_Ser-Thr 5.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60718g00008 - - gmx:100798260 774.622