Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60717g00005 ATGCTTCATCATCATATCAGCTCAATTCTTTTAATGTGCCTTCTCCTCAGTTCATTCTCTCCTCCAATCAAAGCTACCTTCAACCTCAACCTCACCCTCCCCCACCAACACCCTTACCCTGAAGCTGTGGTTCATCAAGTTCAAAGACAAATCAATGCCTCACTTTCAACAAGGGAGCTTCTCTCAAAAGACCAATCCTCTGCCTGCCTCACCGGAAACCCCATCGACGACTGCTGGCGCTGCGACCCAAACTGGTCCGCAAACCGCCAGAAGCTCGCCGACTGCGGCATCGGCTTCGGCCGCGACGCAATGGGCGGAAAAGGCGGCCAGATCTACGTAGTCACCGATTCCTCCGACAGAGACCCGGCCAACCCCGTCCCCGGAACCCTCCGCCACGCCGTAATCCAAGACGTTCCACTCTGGATCGTCTTCTCCGGCGACATGACCATAACCCTAAAACACGAGCNNNNNNNNNNTGTCCAAATCACCGGCCACGGCTGCATCACACTCCAATACATCTCAAACGTTATCATCCACAACATCCACGTCCACCATTGCAAGCCCTCCGGCAACACCAACATAAGAGCCTCTCCGACGCACGTCGGGTGGAGGGGAGTATCCGACGGCGACGGAATCTCCATCTTCGGAGCACGCAAGATCTGGATCGACCACTGCTCCCTCTCGTACTGTACAGACGGGCTAATCGATGCGATAATGGGGTCCACAGGTATCACGATTTCGAACAACCATTTCGCCCACCACGATGAGGTGATGCTGCTGGGGCATAACGATAAGTACTTGCCCGATAAGGGAATGCAGGTCACCATTGCTTTCAACCACTTCGGTGAAGGCTTGGTGCAGAGAATGCCGCGGTGTAGATTGGGGTATATTCATGTTGTTAACAATGATTTCACTCAGTGGGAGATGTATGCCATTGGAGGAAGTGCTAACCCTACCATTAACAGCCAGGGTAACCGTTACACTGCTCCCGCCGATCCTAACGCCAAGGAGGTGACGAAGCGCGTGGACACGAATGAGGGAGAATGGAGCGATTGGAATTGGAGGACGGACGGGGACATAATGGTAAATGGAGCATTTTTCGTGCCATCTGGGGGAGGTGTGAGTGCTGAGTATGCAGAGGCATCAAGCTTGCAACCGAAATCCGCCGTCCAAATCGACCAGCTTACCATGTATTCCGGCGTCTTCGGTGATCCCAGGTAA 1221 0.5324 MLHHHISSILLMCLLLSSFSPPIKATFNLNLTLPHQHPYPEAVVHQVQRQINASLSTRELLSKDQSSACLTGNPIDDCWRCDPNWSANRQKLADCGIGFGRDAMGGKGGQIYVVTDSSDRDPANPVPGTLRHAVIQDVPLWIVFSGDMTITLKHEXXXXVQITGHGCITLQYISNVIIHNIHVHHCKPSGNTNIRASPTHVGWRGVSDGDGISIFGARKIWIDHCSLSYCTDGLIDAIMGSTGITISNNHFAHHDEVMLLGHNDKYLPDKGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPADPNAKEVTKRVDTNEGEWSDWNWRTDGDIMVNGAFFVPSGGGVSAEYAEASSLQPKSAVQIDQLTMYSGVFGDPR 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60717g00005 406 Pfam Pectate lyase 169 325 IPR002022 -
Stsc60717g00005 406 Gene3D - 72 403 IPR012334 -
Stsc60717g00005 406 PRINTS Pollen allergen Amb family signature 381 404 IPR018082 -
Stsc60717g00005 406 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Stsc60717g00005 406 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Stsc60717g00005 406 PRINTS Pollen allergen Amb family signature 352 376 IPR018082 -
Stsc60717g00005 406 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Stsc60717g00005 406 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Stsc60717g00005 406 SUPERFAMILY Pectin lyase-like 61 376 IPR011050 -
Stsc60717g00005 406 PANTHER PECTATE LYASE 18-RELATED 35 401 IPR045032 GO:0030570
Stsc60717g00005 406 SMART amb_all 143 333 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60717g00005 Stsc-Chr60717 10649 12713 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60717g00005 14 406 Polysaccharide Lyase AT3G54920 62.824 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60717g00005 K01728 - gmx:100808438 703.745