Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60717g00004 ATGCTTCATCATCATATCAGCTCAATTCTTTTAATGTGCCTTCTCCTCAGTTCATTCTCTCCTCCAATCAAAGCTACCTTCAACCTCAACCTCACCCTCCCCCACCAACACCCTTACCCTGAAGCTGTGGTTCATCAAGTTCAAAGACAAATCAATGCCTCACTTTCAACAAGGGAGCTTCTCTCAAAAGACCAATCCTCTGCCTGCCTCACCGGAAACCCCATCGACGACTGCTGGCGCTGCGACCCAAACTGGTCCGCAAACCGCCAGAAGCTCGCCGACTGCGGCATCGGCTTCGGCCGCGACGCAATGGGCGGAAAAGGCGGCCAGATCTACGTAGTCACCGATTCCTCCGACAGAGACCCGGCCAACCCCGTCCCCGGAACCCTCCGCCACGCCGTAATCCAAGACGTTCCACTCTGGATCGTCTTCTCCGGCGACATGACCATAACCCTAAAACACGAGCNNNNNNNNNNTGTCCAAATCACCGGCCACGGCTGCATCACACTCCAATACATCTCAAACGTTATCATCCACAACATCCACGTCCACCATTGCAAGCCCTCCGGCAACACCAACATAAGAGCCTCTCCGACGCACGTCGGGTGGAGGGGAGTATCCGACGGCGACGGAATCTCCATCTTCGGAGCACGCAAGATCTGGATCGACCACTGCTCCCTCTCGTACTGTACAGACGGGCTAATCGATGCGATAATGGGGTCCACAGGTATCACGATTTCGAACAACCATTTCGCCCACCACGATGAGGTGATGCTGCTGGGGCATAACGATAAGTACTTGCCCGATAAGGGAATGCAGGTCACCATTGCTTTCAACCACTTCGGTGAAGGCTTGGTGCAGAGAATGCCGCGGTGTAGATTGGGGTATATTCATGTTGTTAACAATGATTTCACTCAGTGGGAGATGTATGCCATTGGAGGAAGTGCTAACCCTACCATTAACAGCCAGGGTAACCGTTACACTGCTCCCGCCGATCCTAACGCCAAGGAGGTGACGAAGCGCGTGGACACGAATGAGGGAGAATGGAGCGATTGGAATTGGAGGACGGACGGGGACATAATGGTAAATGGAGCATTTTTCGTGCCATCTGGGGGAGGTGTGAGTGCTGAGTATGCAGAGGCATCAAGCTTGCAACCGAAATCCGCCGTCCAAATCGACCAGCTTACCATGTATTCCGGCGTCTTCGGTGATCCCAGGGACAATGGGGACTTATTTCCCGGCTACACCGGAGGTGGGACCGTCACCAGCGCCACCAATAAGGGTGGAACTAGTGGTGGGTCCGGTGGTGGTGGCGATGGTGGGGACTTCTTCGGGATGATATTCGGCGGTGGTAGCAGCCAAGCAGCACCACCACCTTCATCAATTCTCGTATTTGTTTCAATCTTTTTGTCTCTTTTAATTATTTTTATTTTGGACACTACCACCAACCATGCTATTTTATTATCATTATTATGA 1476 0.5224 MLHHHISSILLMCLLLSSFSPPIKATFNLNLTLPHQHPYPEAVVHQVQRQINASLSTRELLSKDQSSACLTGNPIDDCWRCDPNWSANRQKLADCGIGFGRDAMGGKGGQIYVVTDSSDRDPANPVPGTLRHAVIQDVPLWIVFSGDMTITLKHEXXXXVQITGHGCITLQYISNVIIHNIHVHHCKPSGNTNIRASPTHVGWRGVSDGDGISIFGARKIWIDHCSLSYCTDGLIDAIMGSTGITISNNHFAHHDEVMLLGHNDKYLPDKGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPADPNAKEVTKRVDTNEGEWSDWNWRTDGDIMVNGAFFVPSGGGVSAEYAEASSLQPKSAVQIDQLTMYSGVFGDPRDNGDLFPGYTGGGTVTSATNKGGTSGGSGGGGDGGDFFGMIFGGGSSQAAPPPSSILVFVSIFLSLLIIFILDTTTNHAILLSLL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60717g00004 491 PANTHER PECTATE LYASE 18-RELATED 35 402 IPR045032 GO:0030570
Stsc60717g00004 491 Pfam Pectate lyase 169 325 IPR002022 -
Stsc60717g00004 491 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Stsc60717g00004 491 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Stsc60717g00004 491 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Stsc60717g00004 491 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Stsc60717g00004 491 PRINTS Pollen allergen Amb family signature 352 376 IPR018082 -
Stsc60717g00004 491 PRINTS Pollen allergen Amb family signature 381 404 IPR018082 -
Stsc60717g00004 491 SMART amb_all 143 333 IPR002022 -
Stsc60717g00004 491 Gene3D - 72 403 IPR012334 -
Stsc60717g00004 491 SUPERFAMILY Pectin lyase-like 73 388 IPR011050 -
Stsc60717g00004 491 MobiDBLite consensus disorder prediction 418 432 - -
Stsc60717g00004 491 MobiDBLite consensus disorder prediction 412 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60717g00004 Stsc-Chr60717 10649 15367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60717g00004 14 408 Polysaccharide Lyase AT3G54920 62.763 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60717g00004 K01728 - gmx:100808438 782.326