Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60717g00003 ATGGGCGGAAAAGGCGGCCAGATCTACGTAGTCACCGATTCCTCCGACAGAGACCCGGCCAACCCCGTCCCCGGAACCCTCCGCCACGCCGTAATCCAAGACGTTCCACTCTGGATCGTCTTCTCCGGCGACATGACCATAACCCTAAAACACGAGCNNNNNNNNNNTGTCCAAATCACCGGCCACGGCTGCATCACACTCCAATACATCTCAAACGTTATCATCCACAACATCCACGTCCACCATTGCAAGCCCTCCGGCAACACCAACATAAGAGCCTCTCCGACGCACGTCGGGTGGAGGGGAGTATCCGACGGCGACGGAATCTCCATCTTCGGAGCACGCAAGATCTGGATCGACCACTGCTCCCTCTCGTACTGTACAGACGGGCTAATCGATGCGATAATGGGGTCCACAGGTATCACGATTTCGAACAACCATTTCGCCCACCACGATGAGGTGATGCTGCTGGGGCATAACGATAAGTACTTGCCCGATAAGGGAATGCAGGTCACCATTGCTTTCAACCACTTCGGTGAAGGCTTGGTGCAGAGAATGCCGCGGTGTAGATTGGGGTATATTCATGTTGTTAACAATGATTTCACTCAGTGGGAGATGTATGCCATTGGAGGAAGTGCTAACCCTACCATTAACAGCCAGGGTAACCGTTACACTGCTCCCGCCGATCCTAACGCCAAGGAGGTGACGAAGCGCGTGGACACGAATGAGGGAGAATGGAGCGATTGGAATTGGAGGACGGACGGGGACATAATGGTAAATGGAGCATTTTTCGTGCCATCTGGGGGAGGTGTGAGTGCTGAGTATGCAGAGGCATCAAGCTTGCAACCGAAATCCGCCGTCCAAATCGACCAGCTTACCATGTATTCCGGCGTCTTCGGTGATCCCAGGGACAATGGGGACTTATTTCCCGGCTACACCGGAGGTGGGACCGTCACCAGCGCCACCAATAAGGGTGGAACTAGTGGTGGGTCCGGTGGTGGTGGCGATGGTGGGGACTTCTTCGGGATGATATTCGGCGGTGGTAGCAGCCAAGCAGCACCACCACCTTCATCAATTCTCGTATTTGTTTCAATCTTTTTGTCTCTTTTAATTATTTTTATTTTGGACACTACCACCAACCATGCTATTTTATTATCATTATTATGA 1167 0.521 MGGKGGQIYVVTDSSDRDPANPVPGTLRHAVIQDVPLWIVFSGDMTITLKHEXXXXVQITGHGCITLQYISNVIIHNIHVHHCKPSGNTNIRASPTHVGWRGVSDGDGISIFGARKIWIDHCSLSYCTDGLIDAIMGSTGITISNNHFAHHDEVMLLGHNDKYLPDKGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPADPNAKEVTKRVDTNEGEWSDWNWRTDGDIMVNGAFFVPSGGGVSAEYAEASSLQPKSAVQIDQLTMYSGVFGDPRDNGDLFPGYTGGGTVTSATNKGGTSGGSGGGGDGGDFFGMIFGGGSSQAAPPPSSILVFVSIFLSLLIIFILDTTTNHAILLSLL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60717g00003 388 Gene3D - 1 300 IPR012334 -
Stsc60717g00003 388 MobiDBLite consensus disorder prediction 315 329 - -
Stsc60717g00003 388 MobiDBLite consensus disorder prediction 306 334 - -
Stsc60717g00003 388 SMART amb_all 40 230 IPR002022 -
Stsc60717g00003 388 SUPERFAMILY Pectin lyase-like 1 278 IPR011050 -
Stsc60717g00003 388 PRINTS Pollen allergen Amb family signature 278 301 IPR018082 -
Stsc60717g00003 388 PRINTS Pollen allergen Amb family signature 207 226 IPR018082 -
Stsc60717g00003 388 PRINTS Pollen allergen Amb family signature 249 273 IPR018082 -
Stsc60717g00003 388 PRINTS Pollen allergen Amb family signature 16 41 IPR018082 -
Stsc60717g00003 388 PRINTS Pollen allergen Amb family signature 185 204 IPR018082 -
Stsc60717g00003 388 PANTHER PECTATE LYASE 18-RELATED 1 299 IPR045032 GO:0030570
Stsc60717g00003 388 Pfam Pectate lyase 66 222 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60717g00003 Stsc-Chr60717 10649 15367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60717g00003 1 305 Polysaccharide Lyase AT3G54920 67.192 1.16e-156 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60717g00003 K01728 - gmx:100808438 644.039