Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60713g00005 ATGGGAAGGGGAAGAGTGGAGCTGAAAAGAATAGAGAACAAGATAAACAGGCAGGTGACTTTTGCAAAGAGGAGAAATGGACTTCTCAAGAAAGCTTATGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTAACCGTGGAAAGCTTTATGAGTTTTGCAGCACCAATAGCATGCTCAAAACACTTGAAAGGTACCAAAATTGCAGCTATGGTGCAGTGGAAGTCAACAAACCTGCCAAAGAGCTTGAGCAGAATAGCTACCGTGAGTATCTAAAACTGAAAGCAAGATTTGAATCTCTTCAAAGGACCCAGAGGAACCTGCTTGGTGAAGACTTAGGTCCATTAGGTACCAAAGAGCTTGAGCAGCTTGAGCGTCAACTTGATACATCTCTCAGGCAAGTCAGGTCTACTAAGCTGGAGGAAATCAATTCAAGAAACCAGTACCGGCAACCGGCGTGGGAGGCTGGCGAGCAAAGCATGCAATATGGTGCACAGAATGCTCACTCTCAAGGCTTCTTCCAGCCTCTGGAATGCAATCCCACATTGCAAATAGGTCCTGATTATAGGTACAACCCTGTAGCTTCAGAACAGATGACAGCAACAACTCAGGCTCATCAACAAGTGAATGGGTTTATTCCTGGATGGATGCTTTAA 669 0.4454 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTNSMLKTLERYQNCSYGAVEVNKPAKELEQNSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKELEQLERQLDTSLRQVRSTKLEEINSRNQYRQPAWEAGEQSMQYGAQNAHSQGFFQPLECNPTLQIGPDYRYNPVASEQMTATTQAHQQVNGFIPGWML 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60713g00005 222 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Stsc60713g00005 222 Coils Coil 125 145 - -
Stsc60713g00005 222 FunFam MADS-box transcription factor 1 13 89 - -
Stsc60713g00005 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc60713g00005 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc60713g00005 222 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Stsc60713g00005 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc60713g00005 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc60713g00005 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc60713g00005 222 Pfam K-box region 88 147 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc60713g00005 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Stsc60713g00005 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc60713g00005 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc60713g00005 222 ProSiteProfiles K-box domain profile. 88 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc60713g00005 222 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60713g00005 Stsc-Chr60713 44233 49928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60713g00005 1 222 MADS-box Gene Family AT5G15800 64.259 1.26e-100 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc60713g00005 K-box 1.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60713g00005 K09264 - gmx:100785322 378.637