Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60710g00001 ATGGAAACTAACCACAACAACACCATCTGTACATTCACAGATATTGATATCACAAATTGGAACAACAATAATCATCTTCATCATTATCATGATTATGATGAAAACAAGAAGATGGAAACTACACAAGAAGGAGGAGAAGATCACCAAATTATTCCTAGCATGTGCTGGCCCAACCTCCTTCAACAACAGCAACAAATACCAGCAATACCCTCAACATCTAGAACCTTCTTCAGTGATGATGACATACTAGGGATCAACTTGCAGAAAGAAGACAAAGACGACGAAGACGAAGAAGAAGGCGGGGAAGAAGAAGAAGAGTTAGGAGCGATGAAGGAGATGATGTACAAGATCGCGGCTATGCAACCGGTGGACATCGACCCGGCGAGCGTTCGAAAGCCGAAGAGGCGAAACGTGAGGATAAGCGAGGATCCTCAGAGCGTGGCGGCGCGTCACAGGAGAGAGAGGATCAGCGAGAGGATCAGAATCCTTCAGAGGCTGGTTCCAGGTGGCACCAAGATGGACACAGCTTCCATGCTCGACGAAGCCATTCGATATGTCAAGTTCTTGAAGCGCCAAATCAGGTTCCTCCAATCAAATCATCATCCAAATCAACCACCACCACCTAATTGGCCTTTTGCACCACCGAATAATAATAATATCATGCTTCACGCTCCTTCTTCTACTGCTGCTGCCGCAACTTCCATGCCTTCCTCCGCCGGGGCTTCCTGGATTTGGAACCCTAGCCAGCCATGGCCATCACGCCGGTGA 768 0.4766 METNHNNTICTFTDIDITNWNNNNHLHHYHDYDENKKMETTQEGGEDHQIIPSMCWPNLLQQQQQIPAIPSTSRTFFSDDDILGINLQKEDKDDEDEEEGGEEEEELGAMKEMMYKIAAMQPVDIDPASVRKPKRRNVRISEDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRFLQSNHHPNQPPPPNWPFAPPNNNNIMLHAPSSTAAAATSMPSSAGASWIWNPSQPWPSRR 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60710g00001 255 MobiDBLite consensus disorder prediction 91 106 - -
Stsc60710g00001 255 FunFam BHLH transcription factor 143 206 - -
Stsc60710g00001 255 Pfam Helix-loop-helix DNA-binding domain 150 189 IPR011598 GO:0046983
Stsc60710g00001 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 203 IPR036638 GO:0046983
Stsc60710g00001 255 MobiDBLite consensus disorder prediction 86 107 - -
Stsc60710g00001 255 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 26 232 IPR045843 GO:0003700|GO:0006355
Stsc60710g00001 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Stsc60710g00001 255 Coils Coil 179 199 - -
Stsc60710g00001 255 SMART finulus 146 195 IPR011598 GO:0046983
Stsc60710g00001 255 Gene3D - 143 204 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60710g00001 Stsc-Chr60710 9534 10301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60710g00001 107 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 88.119 1.96e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60710g00001 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60710g00001 - - aip:107620984 247.284