Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60707g00002 ATGCCTATTAGTGACCAGTGGAAGCAATTCCAGGACTCACGCAGTGTCGGTAAATCGAGGGAATTACTAATATCCCATACAGAGTATGAGGAGGAAGAAACCTCTGAGTTGGATACTTTGTGGAGAGAAATGGAAGTGTCTCTGGCATCAACTTACATTGAAGATGCAGAGGATGAGAATGCAGCCGATGTTTTCGACACTCTGGAAAAACCAAAGGAAGCTTGTGTTCATTACTTTAGATTGGATGATGAAATTGGAATTTGCTGCTTGAAATGTGGCTTTGTGGAGATGGACATTAAAGCTATGACACCAGCCTTTATTCAACATTCAATTTGGCACCAAGAAGAGAAGCAGGGCGGCGGCGGAGAAGATGCTGAATTGAAGTCTGCTGAATTTGAAGATTTCAATCTTGTCTCAAATGCTGAGGATGAAGATGAACCTTTATTGATGGAAGATGATAATGTGTGGGCATTAATTCCAGAACTTCGAAACAAGTTGCACCTCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGAAAAACATTGCCGGCTCTACAGAACCAGCACAGATGGACAAGAGATCCAGAAAAAGAGGTGGCTGTGTGATATCTCATACTCCGGGAGCCGGAAAAACTTTCCTGATTATTGCGTTTCTCGTTAGCTACTTAAAGTTATTCCCAGGAAAGAGACCACTTGTCCTTGCACCAAAAACAACACTTTATACCTGGTATAAAGAATTTATCAAGTGGGAGATTCCAATACCGGTGTATCTAATCCATGGCCGAAGAACCTACAGGGTATTCAACCAGAAACAATCGATGGTTTTTCCTGGAATGCCGAAGCCCACGGAGGATGTCAAGCATGTTTTAGATTGCTTGGAAAAGATACAAAAGTGGCATTCACACCCAAGTGTTCTAATCATGGGCTATACTTCATTTCTGACATTGATGCGAGAGGATTCGAAGTATGCACACAGAAAGTATATGGCTAAAGTGCTGAGGGAAAGTCCCGGACTCCTAGTATTGGACGAAGGGCACAATCCGAGAAGCACCAAGTCCAGGTTGAGGAAAGTTTTGATGAAGGTACAAACAGAATTGAGAATTTTGCTGTCAGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACTCTCTTGTTGGCAAGACCAAAGTTTGCACATGAGGTGCTGAAAGTATTAGACCCGAAATACAAGAAGAAGAAAGGAAAAGTGAGGGCAGTGGAGTACCGAGCAAGGAAATTCTTCATAGAAGTGATCTCTAGGAAAATCGACTCGAACAATGGCGAGGAGAGGATGCAAGGTCTTAACATGTTGAAAAATCTAACAAATGGTTTTATTGATGTTTATGAAGGTAGTAGTTCCGACGATCTTCCCGGTTTGCAAATTTATACTTTGTTGATGAACACAACCGACACGCAGCATGCGATGCTGAAGAGACTGCACAAGAAAATGGCAAAGTGCAATGGATATCCTCTGGAGTTAGAGCTTTTGATAACTCTCGGGTCGATACATCCATGGTTGATCAAAACTGCTGTGTGTGCTAATAAGTTTTTCACAATGGAGGAACTGAGGGAACTAGAGAGATGCAAGTTTGAGTTGAAGATGGGATCCAAAGTAAGATTTGTCATGAGCCTTATCTACCGCGTTGTCCAGAAGGAGAAGATCCTCATCTTCTGCCACAACATTGCGCCGGTGAAGTTATTTATAGAATACTTTGAGTTGTTCTTCAAATGGCAAAAAGGGCGGGAAATTCTGGTGTTAACCGGCGAACTAGAGCTCTTCGAGCGAGGGAGAGTAATGGATAAGTTTGAGGAGCCTGGTGGAGTTTCAAAGATACTCCTTGCTTCCATTACAGCTTGTGCCGAAGGCATTAGTTTGACGGCAGCTTCTCGGGTGATCATGTTGGATTCGGAGTGGAATCCATCGAAAACAAAGCAGGCCATTGCAAGGGCTTTTCGCCCCGGCCAGCAGAAAATGGTGTATGTGTATCAGCTCCTGGTAACAGGCTCGTTGGAGGAAGATAAGTACCGACGAACGACATGGAAAGAGTGGGTGTCAAGCATGATTTTCAGCGAGGAGTTTGTGGAGGATCCTTCCCAATGGCAAGCTCAGAAGATTGAAGATGAAATACTGAGGGAAATGGTTGAGGAGGACAAGTCTAAATCATTTCATATGATAATGAAGAATGAAAAGGCTTCAACAAACAACAGATGA 2235 0.4286 MPISDQWKQFQDSRSVGKSRELLISHTEYEEEETSELDTLWREMEVSLASTYIEDAEDENAADVFDTLEKPKEACVHYFRLDDEIGICCLKCGFVEMDIKAMTPAFIQHSIWHQEEKQGGGGEDAELKSAEFEDFNLVSNAEDEDEPLLMEDDNVWALIPELRNKLHLHQKKAFEFLWKNIAGSTEPAQMDKRSRKRGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFNQKQSMVFPGMPKPTEDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKYAHRKYMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLLLARPKFAHEVLKVLDPKYKKKKGKVRAVEYRARKFFIEVISRKIDSNNGEERMQGLNMLKNLTNGFIDVYEGSSSDDLPGLQIYTLLMNTTDTQHAMLKRLHKKMAKCNGYPLELELLITLGSIHPWLIKTAVCANKFFTMEELRELERCKFELKMGSKVRFVMSLIYRVVQKEKILIFCHNIAPVKLFIEYFELFFKWQKGREILVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEEFVEDPSQWQAQKIEDEILREMVEEDKSKSFHMIMKNEKASTNNR 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60707g00002 744 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 28 741 IPR044567 GO:0080188
Stsc60707g00002 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 725 IPR027417 -
Stsc60707g00002 744 CDD SF2_C_SNF 537 673 - -
Stsc60707g00002 744 Gene3D - 465 744 IPR027417 -
Stsc60707g00002 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 393 IPR027417 -
Stsc60707g00002 744 SMART helicmild6 577 662 IPR001650 -
Stsc60707g00002 744 SMART ultradead3 162 400 IPR014001 -
Stsc60707g00002 744 CDD DEXHc_ATRX-like 166 392 - -
Stsc60707g00002 744 Pfam Helicase conserved C-terminal domain 545 661 IPR001650 -
Stsc60707g00002 744 Gene3D - 138 422 IPR038718 -
Stsc60707g00002 744 Pfam SNF2-related domain 163 395 IPR000330 GO:0005524|GO:0140658
Stsc60707g00002 744 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 191 391 IPR014001 -
Stsc60707g00002 744 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 548 709 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60707g00002 Stsc-Chr60707 36529 39699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60707g00002 575 680 RAD5 or RAD16-like Gene Family AT5G43530 36.792 2.00e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc60707g00002 SNF2_N 3e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60707g00002 K10875 - gmx:100811703 1165.21