Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60704g00005 ATGTCAATCTTCGATGGAGCATTCATGGATACAGAGCTCTCAAAGCGCACATCAATCTTCGGCCTTCGTCTTTGGGTCGTCATCGGAATCCTCGTCGGAGTCCTCATCGTCTTCACCCTTTTTCTCCTCTCCCTTTGTCTCACCTCTCGCCGCCACCGCCGCCGCCGTACCGTCGCCGGAAAATATTCATCCGCCGGAGCACCACCAGCCAAGGAGATCCAGGAGATAGTCCACCTCCCTGGACCACACATGCTCCGGCAGCCTCAGGCGCCGGCGCCGGTGCCGGAGATCCACGTGGACTTCGGGAAGGTGGAGCACCGTGTGGTGGTGCACTCCGATAACAACAATAGAGGAGTGTCTAGCGGTGAAAGCAAAGGAACTGTTAGTGGGTGTGAAACGACATCGTCGTTTGGGAGTGGGAGTGTTGTTTTGGGTGGTGGTGGTGTTGGTGTTGGACCAGAGGTTTCTCATCTTGGTTGGGGAAGATGGTACACTTTGAGAGAACTTGAAGCTGCTACCAATGGATTGTGTCCAGAGAATGTGATTGGTGAAGGTGGCTATGGCATTGTTTATTCTGGTGTTCTAAGTGATGGTACCAAAGTTGCTGTCAAGAACCTCTTGAATAACAAGGGCCAAGCTGAGAGAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGAGTTCGACACAAAAATCTTGTTAGATTACTTGGTTATTGTGTTGAGGGGGCCTACAGGATGCTTGTGTATGAGTATGTGAACAATGGGAATCTAGAACAATGGCTCCATGGGGATGTTGGACCTTTAAGTCCTTTGACATGGGATATACGCATGAACATCATCTTGGGAACTGCAAGAGGATTGGCATATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCACCGAGATGTGAAATCGAGTAATATACTCATTGATCGCCAATGGAACTCCAAGGTTTCTGATTTCGGGCTCGCTAAACTTTTGTGTTCCGAGAATAGCTACGTCACAACTCGAGTGATGGGAACATTTGGTTATGTCGCACCGGAGTATGCCTGCACCGGCATGTTGACCGAAAAGAGTGACGTTTATAGCTTTGGAATACTCATCATGGAGATAATTACTGGGAGAAGTCCTGTTGATTATAGTAGACCACAAGGAGAGGTCAACTTAATAGATTGGTTGAAGACTATGGTTGGGAATAGAAAAGCTGAAGAGGTGATTGATCCTAAGCTCCCTGAGCTGCCGTCCTCCAAGGCTCTTAAACGCGCTATATTGATCGCCCTTCGTTGTGTCGACCCCGATGCGACAAAGAGGCCTAAAATGGGACATGTGATCCACATGCTTGAGCAAGATGATCTGTTATTCCAACATGAGCGCAAAACTGAGGGAGAATCTTCGCGTTCGCATCAGAGTCATCGACAAGAGTGCAAGGACTCGAGTTTAGATATGAGGATACCAGATGCAGGGATCACTGATCAAAGTGAAGATGACAGTAGTAGAAATCACCAGCAGCATAATAGGTGGAGATGA 1527 0.4813 MSIFDGAFMDTELSKRTSIFGLRLWVVIGILVGVLIVFTLFLLSLCLTSRRHRRRRTVAGKYSSAGAPPAKEIQEIVHLPGPHMLRQPQAPAPVPEIHVDFGKVEHRVVVHSDNNNRGVSSGESKGTVSGCETTSSFGSGSVVLGGGGVGVGPEVSHLGWGRWYTLRELEAATNGLCPENVIGEGGYGIVYSGVLSDGTKVAVKNLLNNKGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLEQWLHGDVGPLSPLTWDIRMNIILGTARGLAYLHEGLEPKVVHRDVKSSNILIDRQWNSKVSDFGLAKLLCSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSRPQGEVNLIDWLKTMVGNRKAEEVIDPKLPELPSSKALKRAILIALRCVDPDATKRPKMGHVIHMLEQDDLLFQHERKTEGESSRSHQSHRQECKDSSLDMRIPDAGITDQSEDDSSRNHQQHNRWR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60704g00005 508 Pfam Protein kinase domain 180 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60704g00005 508 MobiDBLite consensus disorder prediction 458 508 - -
Stsc60704g00005 508 SMART serkin_6 176 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60704g00005 508 SUPERFAMILY Protein kinase-like (PK-like) 155 448 IPR011009 -
Stsc60704g00005 508 FunFam Probable serine/threonine-protein kinase At1g01540 156 251 - -
Stsc60704g00005 508 PANTHER OS01G0323000 PROTEIN 8 473 - -
Stsc60704g00005 508 ProSitePatterns Protein kinases ATP-binding region signature. 182 204 IPR017441 GO:0005524
Stsc60704g00005 508 MobiDBLite consensus disorder prediction 458 481 - -
Stsc60704g00005 508 CDD STKc_IRAK 182 449 - -
Stsc60704g00005 508 ProSiteProfiles Protein kinase domain profile. 176 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60704g00005 508 Gene3D Transferase(Phosphotransferase) domain 1 252 466 - -
Stsc60704g00005 508 Gene3D Phosphorylase Kinase; domain 1 160 251 - -
Stsc60704g00005 508 MobiDBLite consensus disorder prediction 488 508 - -
Stsc60704g00005 508 FunFam Putative receptor-like serine/threonine-protein kinase 252 462 - -
Stsc60704g00005 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60704g00005 Stsc-Chr60704 36734 40746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60704g00005 163 507 Trihelix Transcription Factor Family AT5G38560 44.350 2.72e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Stsc60704g00005 Pkinase 5.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60704g00005 - - gmx:100817295 722.62