Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60704g00004 ATGGCAACCATTCATTCTCTTCTTCACTCTTCGAGTTCATCTTTCCTTGCTCAATTTCGTCCTTTTCTACCTCCACTCTCTTCATCTGTACCATTTTCTCATGGAACAAGGCATGGATTGCTTTCTGTGAGGGCCTCTGATTCTGGTGCTGCGGTGCTGGTTGACAAGTCCGAAGCAGAGACTGTTCATCGTCTCAAAACTTCTTACAAAGAGAAAATTGTTCCTTTGCTCATGGAGGAGTTCAATTACACCAATATCCACCAGGTTCCTAAGATTGAGAAAATTACAGTTAACTGTGGTATTGGTGATGCTGCGCAAAATGCAAAGGGTTTGGAAGCAGCAATGAATGATCTAGCTCTGATCACAGGGCAGAGACCGGTTAAGACTCGGGCTAGGGCTTCGGTTGCTACCTTCAAGATCAGGGAAGGTCAACCACTTGGGATAGCTGTGACACTCAGAGGAAAGGTCATGTACAACTTCCTAGACCGAGTTATCAACTTGGGACTTCCCAGGACAAGAGATTTCCAAGGATTGAACCCTAACAGCTTTGACGGCAACGGGAACTACAGCATCGGTGTTAAGGACCAGGGTGTGTTCCCAGAGATCAAATATGATGCAGTTGGCAAGCCTAGGGGAATGGATATCTGCATCACGACAACGGCTAAAACCGATCAAGAAGCGCAAAAGTTTATTAAGGAAGAGGTCTTTTGA 711 0.4557 MATIHSLLHSSSSSFLAQFRPFLPPLSSSVPFSHGTRHGLLSVRASDSGAAVLVDKSEAETVHRLKTSYKEKIVPLLMEEFNYTNIHQVPKIEKITVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARASVATFKIREGQPLGIAVTLRGKVMYNFLDRVINLGLPRTRDFQGLNPNSFDGNGNYSIGVKDQGVFPEIKYDAVGKPRGMDICITTTAKTDQEAQKFIKEEVF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60704g00004 236 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 66 228 IPR002132 GO:0003735|GO:0005840|GO:0006412
Stsc60704g00004 236 Hamap 50S ribosomal protein L5 [rplE]. 62 236 IPR020930 GO:0003735|GO:0005840|GO:0006412
Stsc60704g00004 236 Pfam Ribosomal protein L5 85 141 IPR031310 -
Stsc60704g00004 236 SUPERFAMILY RL5-like 64 231 IPR022803 -
Stsc60704g00004 236 FunFam 50S ribosomal protein L5 60 235 - -
Stsc60704g00004 236 Gene3D - 56 234 IPR022803 -
Stsc60704g00004 236 ProSitePatterns Ribosomal protein L5 signature. 118 134 IPR020929 GO:0003735|GO:0005840|GO:0006412
Stsc60704g00004 236 Pfam ribosomal L5P family C-terminus 145 234 IPR031309 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60704g00004 Stsc-Chr60704 29323 31765 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60704g00004 91 217 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 28.346 7.63e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60704g00004 K02931 - gmx:100800193 335.109