Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60703g00005 ATGGTTGCACCAATCACGTCTATCATTGTCACCGTATCCCCGCCGTCGCCGGCGCTGGTAACCCCCGCACCTACCTCGGCGAACTCAACTCCGTTTGTTCCGACGACTCCGTCGGATTCCAACGGGTTGGCGAGGGGTACATTGACCGGAATCATAATAGGGGCGGTTTTGGGTTCTATGGCGATGCTTATCGTTGGGGGCATTTTCGTCTTTTTCTACAGAAGGGCGAAGAGGAAGAGGAAGAGGAATCAAGGTTTTGAGCAGAGTAACTACTATGGTGCTCCTCCTCAACCAAAAGTTGACCAGGTTAGTGGCTTACCTCAGCAATGGCAAAGTATTCCGTCTCCTTCTACAGATGGTAAAGGAGGGCTGCCTCCAAAACCACCTGGGGTTGTGGCAAATCACCAAAAGACACCATCTGCTAGTAGTCTTGCCACACCACCTGTGTATTCTTCTGCTACCAGCACTGGTATTGGGTCCGAGCGGCCATACATTTCTCAGTCTTCTGGCATGTCCTTGCCTCTATCTCAGAGTAGTTTTACCTATGATGAGTTAGCAATGGCAACAGAAGGGTTCTCCAGCACGAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTTCACAGAGGAGTTCTTCCGAATGGAAAAACTATTGCTGTTAAGCAGCTGAAATCCGAGAGTAAACAGGGGGAGCGTGAGTTTCATGCAGAAGTTGATGTCATTAGCCGTGTCCATCACCGGCATCTTGTTTCCCTAGTTGGATACTGCATCTCAGGTGGCCAGAGGATGCTTGTTTATGAGTTTGTGCCAAATAAAACACTTGAGTTTCATTTGCATGCAAAGGATAGACCGACTATGGACTGGTCAACGAGGATGAAGATTGCAATTGGAGCTGCAAAGGGATTGGCATACCTGCATGAGGATTGTCACCCCAAAATCATACATCGGGACATTAAAGCATCAAATATCCTTATTGATGATCTTTTTGAGGCAAAGGTTGCAGATTTTGGACTAGCCAAATTTTCGACAGACACGGATACCCATGTCTCTACCCGAGTGATGGGAACCTTTGGATACCTGGCTCCTGAATATGCTGCTAGTGGGAAACTCACAGAGAAGTCAGATGTTTTCTCCTATGGTGTTGTGCTTTTGGAGTTGATTACCGGACGAAAACCTGTTGATAAAACTGAATCTTTCACAGATGACAGCATGGTTGAATGGGCAAGGCCCTTACTTTCCCAAGCTTTGGAAAATGGAAATTTTAGTGGACTTCTAGATCCAAGGCGTCGGCCTCGAATGAGCCAGGTTGTTCGAGCTCTAGAAGGAAATATTTCTCTAGATGATCTATACGAGGGGGGCGGCACACCGGGGCACAGCAGAGTTTTTGGTTCCTTCGAGAGTATAAACTATGACGCTGGTCAATACAATGAAGACCTAAAGAAGTTCAGGAAGCTGGCACTGGAAAGCCAAGAGCAAGGCACTAGCTACAGTGGACCGAGCAGTGAGTACGGTCAACCTCCGTCTGCCTCGACCAGTTCAGGCCTGCAAAACACACAAGAGATGGAAAGGGGGAATGCAAAGGGTGGTACTAATAACAACGGTTCTGGTGTGAACTCATGA 1617 0.4774 MVAPITSIIVTVSPPSPALVTPAPTSANSTPFVPTTPSDSNGLARGTLTGIIIGAVLGSMAMLIVGGIFVFFYRRAKRKRKRNQGFEQSNYYGAPPQPKVDQVSGLPQQWQSIPSPSTDGKGGLPPKPPGVVANHQKTPSASSLATPPVYSSATSTGIGSERPYISQSSGMSLPLSQSSFTYDELAMATEGFSSTNLLGQGGFGYVHRGVLPNGKTIAVKQLKSESKQGEREFHAEVDVISRVHHRHLVSLVGYCISGGQRMLVYEFVPNKTLEFHLHAKDRPTMDWSTRMKIAIGAAKGLAYLHEDCHPKIIHRDIKASNILIDDLFEAKVADFGLAKFSTDTDTHVSTRVMGTFGYLAPEYAASGKLTEKSDVFSYGVVLLELITGRKPVDKTESFTDDSMVEWARPLLSQALENGNFSGLLDPRRRPRMSQVVRALEGNISLDDLYEGGGTPGHSRVFGSFESINYDAGQYNEDLKKFRKLALESQEQGTSYSGPSSEYGQPPSASTSSGLQNTQEMERGNAKGGTNNNGSGVNS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60703g00005 538 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 61 427 IPR047117 -
Stsc60703g00005 538 MobiDBLite consensus disorder prediction 83 171 - -
Stsc60703g00005 538 ProSitePatterns Protein kinases ATP-binding region signature. 198 220 IPR017441 GO:0005524
Stsc60703g00005 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 312 324 IPR008271 GO:0004672|GO:0006468
Stsc60703g00005 538 MobiDBLite consensus disorder prediction 102 118 - -
Stsc60703g00005 538 Pfam Protein tyrosine and serine/threonine kinase 195 397 IPR001245 GO:0004672|GO:0006468
Stsc60703g00005 538 SMART serkin_6 192 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60703g00005 538 FunFam Proline-rich receptor-like protein kinase PERK8 164 267 - -
Stsc60703g00005 538 Gene3D Phosphorylase Kinase; domain 1 160 267 - -
Stsc60703g00005 538 FunFam proline-rich receptor-like protein kinase PERK8 268 428 - -
Stsc60703g00005 538 MobiDBLite consensus disorder prediction 135 171 - -
Stsc60703g00005 538 MobiDBLite consensus disorder prediction 488 538 - -
Stsc60703g00005 538 SUPERFAMILY Protein kinase-like (PK-like) 165 439 IPR011009 -
Stsc60703g00005 538 Gene3D Transferase(Phosphotransferase) domain 1 268 447 - -
Stsc60703g00005 538 ProSiteProfiles Protein kinase domain profile. 192 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60703g00005 Stsc-Chr60703 20136 24278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60703g00005 24 500 Trihelix Transcription Factor Family AT1G70460 48.235 6.67e-141 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc60703g00005 PK_Tyr_Ser-Thr 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60703g00005 - - aip:107617256 857.44